Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 1987461..1988080 Replicon chromosome
Accession NZ_CP021740
Organism Klebsiella pneumoniae strain AR_0126

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag AM373_RS10065 Protein ID WP_002892050.1
Coordinates 1987461..1987679 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag AM373_RS10070 Protein ID WP_002892066.1
Coordinates 1987706..1988080 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM373_RS10035 1983509..1983772 + 264 WP_002892011.1 type B 50S ribosomal protein L31 -
AM373_RS10040 1983772..1983912 + 141 WP_002892018.1 type B 50S ribosomal protein L36 -
AM373_RS10045 1983909..1984607 - 699 WP_002892021.1 GNAT family N-acetyltransferase -
AM373_RS10050 1984752..1986158 + 1407 WP_020316531.1 PLP-dependent aminotransferase family protein -
AM373_RS10055 1986133..1986603 - 471 WP_002892026.1 YlaC family protein -
AM373_RS28775 1986624..1986764 + 141 WP_004147370.1 hypothetical protein -
AM373_RS10060 1986736..1987302 - 567 WP_002892030.1 maltose O-acetyltransferase -
AM373_RS10065 1987461..1987679 - 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
AM373_RS10070 1987706..1988080 - 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
AM373_RS10075 1988566..1991712 - 3147 WP_002892069.1 multidrug efflux RND transporter permease subunit AcrB -
AM373_RS10080 1991735..1992928 - 1194 WP_004177236.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T77268 WP_002892050.1 NZ_CP021740:c1987679-1987461 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T77268 NZ_CP021740:c1987679-1987461 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT77268 WP_002892066.1 NZ_CP021740:c1988080-1987706 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT77268 NZ_CP021740:c1988080-1987706 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References