Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4629978..4630249 | Replicon | chromosome |
| Accession | NZ_CP021736 | ||
| Organism | Escherichia coli strain AR_0150 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4630016..4630119 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4629978..4630249 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM397_RS23675 | 4627135..4628574 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM397_RS23680 | 4628692..4628928 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM397_RS23685 | 4629033..4629224 | + | 192 | WP_000457842.1 | YebW family protein | - |
| AM397_RS23690 | 4629225..4629881 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4629978..4630249 | + | 272 | - | - | Antitoxin |
| - | 4630016..4630119 | - | 104 | - | - | Toxin |
| AM397_RS23695 | 4630277..4630618 | - | 342 | WP_000976476.1 | YebY family protein | - |
| AM397_RS23700 | 4630631..4631503 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| AM397_RS23705 | 4631507..4631881 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM397_RS23710 | 4632020..4632250 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM397_RS23715 | 4632352..4633008 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM397_RS23720 | 4633032..4633694 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77243 NZ_CP021736:c4630119-4630016 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT77243 NZ_CP021736:4629978-4630249 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
