Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 4232347..4232985 Replicon chromosome
Accession NZ_CP021736
Organism Escherichia coli strain AR_0150

Toxin (Protein)


Gene name hicA Uniprot ID A0A0A6TXU8
Locus tag AM397_RS21680 Protein ID WP_001447010.1
Coordinates 4232347..4232523 (+) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag AM397_RS21685 Protein ID WP_001270286.1
Coordinates 4232569..4232985 (+) Length 139 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM397_RS21660 4227966..4229180 - 1215 WP_001326689.1 BenE family transporter YdcO -
AM397_RS21665 4229233..4229769 + 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
AM397_RS21670 4229842..4231803 + 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
AM397_RS21675 4231895..4232125 - 231 WP_000494244.1 YncJ family protein -
AM397_RS21680 4232347..4232523 + 177 WP_001447010.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
AM397_RS21685 4232569..4232985 + 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
AM397_RS21690 4233064..4234470 + 1407 WP_000760626.1 PLP-dependent aminotransferase family protein -
AM397_RS21695 4234715..4235860 + 1146 WP_000047424.1 ABC transporter substrate-binding protein -
AM397_RS21700 4235878..4236891 + 1014 WP_000220396.1 ABC transporter ATP-binding protein -
AM397_RS21705 4236892..4237833 + 942 WP_001251304.1 ABC transporter permease -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

(91-134)


Sequences


Toxin        


Download         Length: 59 a.a.        Molecular weight: 6779.86 Da        Isoelectric Point: 11.2298

>T77241 WP_001447010.1 NZ_CP021736:4232347-4232523 [Escherichia coli]
VKQSEFRRWLESQGVDVANSSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T77241 NZ_CP021736:4232347-4232523 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATAGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT77241 WP_001270286.1 NZ_CP021736:4232569-4232985 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT77241 NZ_CP021736:4232569-4232985 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A0A6TXU8


Antitoxin

Source ID Structure

References