Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4688195..4688466 | Replicon | chromosome |
| Accession | NZ_CP021732 | ||
| Organism | Escherichia coli strain AR_0114 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4688325..4688428 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4688195..4688466 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM361_RS23955 | 4684750..4685412 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM361_RS23960 | 4685436..4686092 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM361_RS23965 | 4686194..4686424 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM361_RS23970 | 4686563..4686937 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM361_RS23975 | 4686941..4687813 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| AM361_RS23980 | 4687826..4688167 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 4688195..4688466 | - | 272 | - | - | Antitoxin |
| - | 4688325..4688428 | + | 104 | - | - | Toxin |
| AM361_RS23985 | 4688563..4689219 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AM361_RS23990 | 4689220..4689411 | - | 192 | WP_000457842.1 | YebW family protein | - |
| AM361_RS23995 | 4689516..4689752 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM361_RS24000 | 4689870..4691309 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77207 NZ_CP021732:4688325-4688428 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT77207 NZ_CP021732:c4688466-4688195 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
