Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1831175..1831446 | Replicon | chromosome |
| Accession | NZ_CP021726 | ||
| Organism | Escherichia coli strain Combat11I9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1831213..1831316 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1831175..1831446 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDC27_RS09365 | 1828332..1829771 | + | 1440 | WP_077896704.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CDC27_RS09370 | 1829889..1830125 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CDC27_RS09375 | 1830230..1830421 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CDC27_RS09380 | 1830422..1831078 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 1831175..1831446 | + | 272 | - | - | Antitoxin |
| - | 1831213..1831316 | - | 104 | - | - | Toxin |
| CDC27_RS09385 | 1831474..1831815 | - | 342 | WP_000976483.1 | YebY family protein | - |
| CDC27_RS09390 | 1831827..1832699 | - | 873 | WP_033814654.1 | copper homeostasis membrane protein CopD | - |
| CDC27_RS09395 | 1832703..1833077 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CDC27_RS09400 | 1833216..1833446 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CDC27_RS09405 | 1833548..1834204 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| CDC27_RS09410 | 1834228..1834890 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77159 NZ_CP021726:c1831316-1831213 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT77159 NZ_CP021726:1831175-1831446 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTAAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTAAGGCGGTTTTTTTAT
