Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 818273..818418 | Replicon | chromosome |
| Accession | NZ_CP021708 | ||
| Organism | Klebsiella pneumoniae strain AR_0143 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 818309..818411 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 818273..818418 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM390_RS04110 | 813403..815463 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AM390_RS04115 | 815467..816126 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| AM390_RS04120 | 816205..816435 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM390_RS04125 | 816548..816922 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM390_RS04130 | 816926..817795 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AM390_RS04135 | 817812..818150 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 818273..818418 | - | 146 | - | - | Antitoxin |
| - | 818309..818411 | + | 103 | - | - | Toxin |
| AM390_RS30485 | 818787..818930 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM390_RS04145 | 819035..820003 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM390_RS04150 | 820160..820813 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| AM390_RS04155 | 820810..821001 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM390_RS04160 | 821099..821338 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM390_RS04165 | 821454..822887 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77080 NZ_CP021708:818309-818411 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT77080 NZ_CP021708:c818418-818273 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
