Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1766921..1767066 | Replicon | chromosome |
| Accession | NZ_CP021696 | ||
| Organism | Klebsiella pneumoniae strain AR_0158 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1766928..1767030 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1766921..1767066 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM404_RS09045 | 1762453..1763886 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM404_RS09050 | 1764002..1764241 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM404_RS09055 | 1764339..1764530 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM404_RS09060 | 1764527..1765180 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| AM404_RS09065 | 1765337..1766305 | + | 969 | WP_073972692.1 | DUF535 family protein | - |
| AM404_RS29510 | 1766410..1766553 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1766921..1767066 | + | 146 | - | - | Antitoxin |
| - | 1766928..1767030 | - | 103 | - | - | Toxin |
| AM404_RS09075 | 1767189..1767527 | - | 339 | WP_061891631.1 | YebY family protein | - |
| AM404_RS09080 | 1767544..1768413 | - | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| AM404_RS09085 | 1768417..1768791 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM404_RS09090 | 1768904..1769134 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM404_RS09095 | 1769213..1769872 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM404_RS09100 | 1769876..1771936 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77053 NZ_CP021696:c1767030-1766928 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT77053 NZ_CP021696:1766921-1767066 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
