Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3796860..3797128 | Replicon | chromosome |
| Accession | NZ_CP021689 | ||
| Organism | Escherichia coli strain AR_0058 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3796898..3797000 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3796860..3797128 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM437_RS19820 | 3794018..3795457 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM437_RS19825 | 3795574..3795810 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM437_RS19830 | 3795915..3796106 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AM437_RS19835 | 3796107..3796763 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 3796860..3797128 | + | 269 | - | - | Antitoxin |
| - | 3796898..3797000 | - | 103 | - | - | Toxin |
| AM437_RS19840 | 3797158..3797499 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AM437_RS19845 | 3797512..3798384 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| AM437_RS19850 | 3798388..3798762 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM437_RS19855 | 3798901..3799131 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM437_RS19860 | 3799233..3799889 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AM437_RS19865 | 3799913..3800575 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T76999 NZ_CP021689:c3797000-3796898 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT76999 NZ_CP021689:3796860-3797128 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
