Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1701251..1701522 | Replicon | chromosome |
| Accession | NZ_CP021683 | ||
| Organism | Escherichia coli strain AR_0162 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1701381..1701484 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1701251..1701522 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM408_RS09730 | 1697806..1698468 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM408_RS09735 | 1698492..1699148 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM408_RS09740 | 1699250..1699480 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM408_RS09745 | 1699619..1699993 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM408_RS09750 | 1699997..1700869 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| AM408_RS09755 | 1700882..1701223 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1701251..1701522 | - | 272 | - | - | Antitoxin |
| - | 1701381..1701484 | + | 104 | - | - | Toxin |
| AM408_RS09760 | 1701619..1702275 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AM408_RS09765 | 1702276..1702467 | - | 192 | WP_000457842.1 | YebW family protein | - |
| AM408_RS09770 | 1702572..1702808 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM408_RS09775 | 1702926..1704365 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T76939 NZ_CP021683:1701381-1701484 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT76939 NZ_CP021683:c1701522-1701251 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
