Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3858481..3858626 | Replicon | chromosome |
| Accession | NZ_CP021539 | ||
| Organism | Klebsiella pneumoniae strain AR_0047 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3858488..3858590 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3858481..3858626 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM426_RS19480 | 3854013..3855446 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM426_RS19485 | 3855562..3855801 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM426_RS19490 | 3855899..3856090 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM426_RS19495 | 3856087..3856740 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| AM426_RS19500 | 3856897..3857865 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM426_RS29905 | 3857970..3858113 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3858481..3858626 | + | 146 | - | - | Antitoxin |
| - | 3858488..3858590 | - | 103 | - | - | Toxin |
| AM426_RS19510 | 3858749..3859087 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM426_RS19515 | 3859104..3859973 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AM426_RS19520 | 3859977..3860351 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM426_RS19525 | 3860464..3860694 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM426_RS19530 | 3860773..3861432 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM426_RS19535 | 3861436..3863496 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T76811 NZ_CP021539:c3858590-3858488 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT76811 NZ_CP021539:3858481-3858626 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
