Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2591015..2591286 | Replicon | chromosome |
| Accession | NZ_CP021535 | ||
| Organism | Escherichia coli strain AR_0119 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2591145..2591248 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2591015..2591286 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM366_RS13350 | 2587570..2588232 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM366_RS13355 | 2588256..2588912 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| AM366_RS13360 | 2589014..2589244 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM366_RS13365 | 2589383..2589757 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AM366_RS13370 | 2589761..2590633 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| AM366_RS13375 | 2590646..2590987 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2591015..2591286 | - | 272 | - | - | Antitoxin |
| - | 2591145..2591248 | + | 104 | - | - | Toxin |
| AM366_RS13380 | 2591383..2592039 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| AM366_RS13385 | 2592040..2592231 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AM366_RS13390 | 2592336..2592572 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM366_RS13395 | 2592690..2594129 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T76773 NZ_CP021535:2591145-2591248 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT76773 NZ_CP021535:c2591286-2591015 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
