Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162504..2162772 | Replicon | chromosome |
| Accession | NZ_CP021454 | ||
| Organism | Escherichia coli strain H105 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2162632..2162734 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162504..2162772 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCL28_RS10945 | 2159057..2159719 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CCL28_RS10950 | 2159743..2160399 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| CCL28_RS10955 | 2160501..2160731 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CCL28_RS10960 | 2160870..2161244 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CCL28_RS10965 | 2161248..2162120 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| CCL28_RS10970 | 2162133..2162474 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2162504..2162772 | - | 269 | - | - | Antitoxin |
| - | 2162632..2162734 | + | 103 | - | - | Toxin |
| CCL28_RS10975 | 2162869..2163525 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| CCL28_RS10980 | 2163526..2163717 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CCL28_RS10985 | 2163822..2164058 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CCL28_RS10990 | 2164175..2165614 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T76682 NZ_CP021454:2162632-2162734 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT76682 NZ_CP021454:c2162772-2162504 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
