Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2562663..2563188 Replicon chromosome
Accession NZ_CP021431
Organism Yoonia vestfoldensis strain SMR4r

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LOKVESSMR4R_RS12830 Protein ID WP_087208972.1
Coordinates 2562663..2562953 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LOKVESSMR4R_RS12835 Protein ID WP_087208974.1
Coordinates 2562943..2563188 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOKVESSMR4R_RS12805 2558266..2558865 + 600 WP_087208963.1 hypothetical protein -
LOKVESSMR4R_RS12810 2558865..2559425 + 561 WP_087208965.1 hypothetical protein -
LOKVESSMR4R_RS12815 2559440..2559838 + 399 WP_087213178.1 hypothetical protein -
LOKVESSMR4R_RS12820 2559842..2562436 + 2595 WP_087208967.1 host specificity protein J -
LOKVESSMR4R_RS12825 2562436..2562666 + 231 WP_087208969.1 hypothetical protein -
LOKVESSMR4R_RS12830 2562663..2562953 - 291 WP_087208972.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LOKVESSMR4R_RS12835 2562943..2563188 - 246 WP_087208974.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
LOKVESSMR4R_RS12840 2563286..2563597 + 312 WP_087208976.1 phage holin family protein -
LOKVESSMR4R_RS12845 2563698..2564504 + 807 WP_087213183.1 TIGR02594 family protein -
LOKVESSMR4R_RS12850 2564888..2565928 - 1041 WP_087213186.1 IS110 family transposase -
LOKVESSMR4R_RS12855 2566212..2566469 + 258 WP_087208978.1 hypothetical protein -
LOKVESSMR4R_RS12860 2566602..2566955 + 354 WP_087208981.1 hypothetical protein -
LOKVESSMR4R_RS12865 2566952..2567158 + 207 WP_087208985.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-71)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10968.82 Da        Isoelectric Point: 10.8212

>T76619 WP_087208972.1 NZ_CP021431:c2562953-2562663 [Yoonia vestfoldensis]
MSYELQFLPSALKEWDKLGATLQSQFKKKLKERLAQPHVVADRLHGMPSHYKIKLRSAGYRLVYRVEDTTVTVTVVAVGK
RERNAVYKAAQKRAAP

Download         Length: 291 bp

>T76619 NZ_CP021431:c2562953-2562663 [Yoonia vestfoldensis]
ATGAGCTATGAGCTGCAATTCCTGCCGTCAGCCCTCAAAGAATGGGACAAACTCGGCGCAACGCTGCAGTCGCAGTTCAA
AAAGAAGCTAAAAGAGCGACTTGCTCAGCCCCATGTTGTTGCTGATCGCCTGCACGGCATGCCGAGCCACTACAAAATCA
AGCTGCGCAGCGCGGGCTATCGCCTCGTTTACCGCGTTGAGGACACCACTGTCACGGTAACAGTGGTGGCTGTGGGCAAA
CGCGAGCGGAACGCCGTTTATAAAGCCGCGCAGAAACGTGCTGCCCCCTAA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9052.38 Da        Isoelectric Point: 4.7724

>AT76619 WP_087208974.1 NZ_CP021431:c2563188-2562943 [Yoonia vestfoldensis]
MQRVEANVAVSVSDLKKNPSQVMAMAHGESVAVLNHNRVMAYMVPAARYEAMMEHLDDLELAETIKQRADETPVRVSLDE
L

Download         Length: 246 bp

>AT76619 NZ_CP021431:c2563188-2562943 [Yoonia vestfoldensis]
ATGCAGCGGGTCGAAGCCAATGTCGCTGTGAGCGTCTCGGACCTCAAAAAAAACCCGTCGCAGGTCATGGCGATGGCGCA
TGGCGAGTCCGTTGCTGTGCTGAACCATAACCGTGTCATGGCTTATATGGTGCCCGCCGCGCGCTATGAGGCGATGATGG
AGCATCTTGACGACTTGGAGCTGGCCGAGACCATCAAACAACGTGCCGATGAGACACCGGTTCGGGTCAGCTTGGATGAG
CTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References