Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 1038023..1038582 Replicon chromosome
Accession NZ_CP021376
Organism Oceanisphaera avium strain AMac2203

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CBP12_RS04720 Protein ID WP_086963410.1
Coordinates 1038307..1038582 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CBP12_RS04715 Protein ID WP_086963409.1
Coordinates 1038023..1038310 (+) Length 96 a.a.

Genomic Context


CBP12_RS04700CBP12_RS04715CBP12_RS04720CBP12_RS04690CBP12_RS04695CBP12_RS04705CBP12_RS04710CBP12_RS04725CBP12_RS04730CBP12_RS04735CBP12_RS04740CBP12_RS04745
Location: 1036181..1037215 (1035 bp)
Type: Others
Protein ID: WP_086963406.1
Location: 1038023..1038310 (288 bp)
Type: Antitoxin
Protein ID: WP_086963409.1
Location: 1038307..1038582 (276 bp)
Type: Toxin
Protein ID: WP_086963410.1
Location: 1034541..1034780 (240 bp)
Type: Others
Protein ID: WP_086963405.1
Location: 1034770..1035969 (1200 bp)
Type: Others
Protein ID: WP_086965377.1
Location: 1037237..1037494 (258 bp)
Type: Others
Protein ID: WP_086963407.1
Location: 1037518..1037856 (339 bp)
Type: Others
Protein ID: WP_086963408.1
Location: 1038714..1039253 (540 bp)
Type: Others
Protein ID: WP_086963411.1
Location: 1039545..1040843 (1299 bp)
Type: Others
Protein ID: WP_086963412.1
Location: 1040910..1041626 (717 bp)
Type: Others
Protein ID: WP_086963413.1
Location: 1041753..1042250 (498 bp)
Type: Others
Protein ID: WP_086963414.1
Location: 1042255..1042674 (420 bp)
Type: Others
Protein ID: WP_086963415.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CBP12_RS046901034541..1034780-240WP_086963405.1sulfurtransferase-like selenium metabolism protein YedF-
CBP12_RS046951034770..1035969-1200WP_086965377.1selenium metabolism membrane protein YedE/FdhT-
CBP12_RS047001036181..1037215+1035WP_086963406.1sensor domain-containing diguanylate cyclase-
CBP12_RS047051037237..1037494-258WP_086963407.1hypothetical protein-
CBP12_RS047101037518..1037856-339WP_086963408.1thioredoxin family protein-
CBP12_RS047151038023..1038310+288WP_086963409.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
CBP12_RS047201038307..1038582+276WP_086963410.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CBP12_RS047251038714..1039253-540WP_086963411.1hypothetical protein-
CBP12_RS047301039545..1040843-1299WP_086963412.1DNA (cytosine-5-)-methyltransferase-
CBP12_RS047351040910..1041626-717WP_086963413.1restriction endonuclease-
CBP12_RS047401041753..1042250-498WP_086963414.1hypothetical protein-
CBP12_RS047451042255..1042674-420WP_086963415.1hypothetical protein-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 92 a.a.        Molecular weight: 10606.30 Da        Isoelectric Point: 4.6286

>T76553 WP_086963410.1 NZ_CP021376:1038307-1038582 [Oceanisphaera avium]
VILWEEESLNDREKIFEFLYDFNPTAADKTDQVIEDKVENLLQQSLMGVQRDGIKGRLLIIPEISMIVSYLVDGSVIRIM
RVLHQKQKFPT

Download         Length: 276 bp

>T76553 NZ_CP021376:1038307-1038582 [Oceanisphaera avium]
GTGATTCTATGGGAAGAAGAATCTCTGAACGACCGAGAAAAAATTTTTGAATTTCTTTATGACTTTAATCCTACGGCTGC
AGATAAAACAGATCAGGTAATTGAAGATAAAGTAGAAAATTTACTTCAACAGTCATTAATGGGCGTGCAACGAGATGGGA
TAAAAGGTCGATTACTCATAATCCCAGAGATATCAATGATAGTTTCCTATTTAGTTGATGGCTCTGTCATTCGTATCATG
AGAGTACTACATCAGAAACAAAAATTTCCGACGTAA

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10947.31 Da        Isoelectric Point: 7.1688

>AT76553 WP_086963409.1 NZ_CP021376:1038023-1038310 [Oceanisphaera avium]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRDLTEQLADQQRKALSHDVWLSEQINLAFEKLDAGKSTFIEHDQAKSI
MAERKAKIRSRSVNP

Download         Length: 288 bp

>AT76553 NZ_CP021376:1038023-1038310 [Oceanisphaera avium]
ATGGATACTAGAATTCAGTTTCGAGTCGATGAAGAAACCAAGCGCCTAGCCCAACAAATGGCTGAAAGCCAAGGCCGTAC
CCTTAGTGATGCTTGCAGAGACCTTACGGAACAATTGGCAGATCAACAACGTAAAGCCTTGTCTCATGATGTTTGGCTAA
GTGAGCAAATAAATTTAGCTTTTGAAAAATTAGATGCCGGCAAATCTACTTTTATTGAACATGACCAAGCCAAATCCATA
ATGGCAGAACGTAAAGCTAAGATCCGCAGCCGGAGTGTTAACCCGTGA

Similar Proteins


Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

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Source
ID
Structure
No matching records found


Antitoxin

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Source
ID
Structure
No matching records found

References