Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE-RelB |
Location | 1038023..1038582 | Replicon | chromosome |
Accession | NZ_CP021376 | ||
Organism | Oceanisphaera avium strain AMac2203 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | CBP12_RS04720 | Protein ID | WP_086963410.1 |
Coordinates | 1038307..1038582 (+) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | CBP12_RS04715 | Protein ID | WP_086963409.1 |
Coordinates | 1038023..1038310 (+) | Length | 96 a.a. |
Genomic Context
Location: 1036181..1037215 (1035 bp)
Type: Others
Protein ID: WP_086963406.1
Type: Others
Protein ID: WP_086963406.1
Location: 1038023..1038310 (288 bp)
Type: Antitoxin
Protein ID: WP_086963409.1
Type: Antitoxin
Protein ID: WP_086963409.1
Location: 1038307..1038582 (276 bp)
Type: Toxin
Protein ID: WP_086963410.1
Type: Toxin
Protein ID: WP_086963410.1
Location: 1034541..1034780 (240 bp)
Type: Others
Protein ID: WP_086963405.1
Type: Others
Protein ID: WP_086963405.1
Location: 1034770..1035969 (1200 bp)
Type: Others
Protein ID: WP_086965377.1
Type: Others
Protein ID: WP_086965377.1
Location: 1037237..1037494 (258 bp)
Type: Others
Protein ID: WP_086963407.1
Type: Others
Protein ID: WP_086963407.1
Location: 1037518..1037856 (339 bp)
Type: Others
Protein ID: WP_086963408.1
Type: Others
Protein ID: WP_086963408.1
Location: 1038714..1039253 (540 bp)
Type: Others
Protein ID: WP_086963411.1
Type: Others
Protein ID: WP_086963411.1
Location: 1039545..1040843 (1299 bp)
Type: Others
Protein ID: WP_086963412.1
Type: Others
Protein ID: WP_086963412.1
Location: 1040910..1041626 (717 bp)
Type: Others
Protein ID: WP_086963413.1
Type: Others
Protein ID: WP_086963413.1
Location: 1041753..1042250 (498 bp)
Type: Others
Protein ID: WP_086963414.1
Type: Others
Protein ID: WP_086963414.1
Location: 1042255..1042674 (420 bp)
Type: Others
Protein ID: WP_086963415.1
Type: Others
Protein ID: WP_086963415.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CBP12_RS04690 | 1034541..1034780 | - | 240 | WP_086963405.1 | sulfurtransferase-like selenium metabolism protein YedF | - |
CBP12_RS04695 | 1034770..1035969 | - | 1200 | WP_086965377.1 | selenium metabolism membrane protein YedE/FdhT | - |
CBP12_RS04700 | 1036181..1037215 | + | 1035 | WP_086963406.1 | sensor domain-containing diguanylate cyclase | - |
CBP12_RS04705 | 1037237..1037494 | - | 258 | WP_086963407.1 | hypothetical protein | - |
CBP12_RS04710 | 1037518..1037856 | - | 339 | WP_086963408.1 | thioredoxin family protein | - |
CBP12_RS04715 | 1038023..1038310 | + | 288 | WP_086963409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
CBP12_RS04720 | 1038307..1038582 | + | 276 | WP_086963410.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
CBP12_RS04725 | 1038714..1039253 | - | 540 | WP_086963411.1 | hypothetical protein | - |
CBP12_RS04730 | 1039545..1040843 | - | 1299 | WP_086963412.1 | DNA (cytosine-5-)-methyltransferase | - |
CBP12_RS04735 | 1040910..1041626 | - | 717 | WP_086963413.1 | restriction endonuclease | - |
CBP12_RS04740 | 1041753..1042250 | - | 498 | WP_086963414.1 | hypothetical protein | - |
CBP12_RS04745 | 1042255..1042674 | - | 420 | WP_086963415.1 | hypothetical protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10606.30 Da Isoelectric Point: 4.6286
>T76553 WP_086963410.1 NZ_CP021376:1038307-1038582 [Oceanisphaera avium]
VILWEEESLNDREKIFEFLYDFNPTAADKTDQVIEDKVENLLQQSLMGVQRDGIKGRLLIIPEISMIVSYLVDGSVIRIM
RVLHQKQKFPT
VILWEEESLNDREKIFEFLYDFNPTAADKTDQVIEDKVENLLQQSLMGVQRDGIKGRLLIIPEISMIVSYLVDGSVIRIM
RVLHQKQKFPT
Download Length: 276 bp
>T76553 NZ_CP021376:1038307-1038582 [Oceanisphaera avium]
GTGATTCTATGGGAAGAAGAATCTCTGAACGACCGAGAAAAAATTTTTGAATTTCTTTATGACTTTAATCCTACGGCTGC
AGATAAAACAGATCAGGTAATTGAAGATAAAGTAGAAAATTTACTTCAACAGTCATTAATGGGCGTGCAACGAGATGGGA
TAAAAGGTCGATTACTCATAATCCCAGAGATATCAATGATAGTTTCCTATTTAGTTGATGGCTCTGTCATTCGTATCATG
AGAGTACTACATCAGAAACAAAAATTTCCGACGTAA
GTGATTCTATGGGAAGAAGAATCTCTGAACGACCGAGAAAAAATTTTTGAATTTCTTTATGACTTTAATCCTACGGCTGC
AGATAAAACAGATCAGGTAATTGAAGATAAAGTAGAAAATTTACTTCAACAGTCATTAATGGGCGTGCAACGAGATGGGA
TAAAAGGTCGATTACTCATAATCCCAGAGATATCAATGATAGTTTCCTATTTAGTTGATGGCTCTGTCATTCGTATCATG
AGAGTACTACATCAGAAACAAAAATTTCCGACGTAA
Antitoxin
Download Length: 96 a.a. Molecular weight: 10947.31 Da Isoelectric Point: 7.1688
>AT76553 WP_086963409.1 NZ_CP021376:1038023-1038310 [Oceanisphaera avium]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRDLTEQLADQQRKALSHDVWLSEQINLAFEKLDAGKSTFIEHDQAKSI
MAERKAKIRSRSVNP
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRDLTEQLADQQRKALSHDVWLSEQINLAFEKLDAGKSTFIEHDQAKSI
MAERKAKIRSRSVNP
Download Length: 288 bp
>AT76553 NZ_CP021376:1038023-1038310 [Oceanisphaera avium]
ATGGATACTAGAATTCAGTTTCGAGTCGATGAAGAAACCAAGCGCCTAGCCCAACAAATGGCTGAAAGCCAAGGCCGTAC
CCTTAGTGATGCTTGCAGAGACCTTACGGAACAATTGGCAGATCAACAACGTAAAGCCTTGTCTCATGATGTTTGGCTAA
GTGAGCAAATAAATTTAGCTTTTGAAAAATTAGATGCCGGCAAATCTACTTTTATTGAACATGACCAAGCCAAATCCATA
ATGGCAGAACGTAAAGCTAAGATCCGCAGCCGGAGTGTTAACCCGTGA
ATGGATACTAGAATTCAGTTTCGAGTCGATGAAGAAACCAAGCGCCTAGCCCAACAAATGGCTGAAAGCCAAGGCCGTAC
CCTTAGTGATGCTTGCAGAGACCTTACGGAACAATTGGCAGATCAACAACGTAAAGCCTTGTCTCATGATGTTTGGCTAA
GTGAGCAAATAAATTTAGCTTTTGAAAAATTAGATGCCGGCAAATCTACTTTTATTGAACATGACCAAGCCAAATCCATA
ATGGCAGAACGTAAAGCTAAGATCCGCAGCCGGAGTGTTAACCCGTGA