Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3437026..3437192 | Replicon | chromosome |
| Accession | NZ_CP021329 | ||
| Organism | Raoultella ornithinolytica strain Ro24724 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3437084..3437187 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3437026..3437192 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA210_RS19175 | 3432164..3434224 | + | 2061 | WP_032724251.1 | oligopeptidase B | - |
| CA210_RS19180 | 3434230..3434889 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| CA210_RS19185 | 3434968..3435198 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| CA210_RS19190 | 3435325..3435699 | + | 375 | WP_088883845.1 | CopC domain-containing protein YobA | - |
| CA210_RS19195 | 3435703..3436572 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| CA210_RS19200 | 3436589..3436927 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 3437026..3437192 | - | 167 | - | - | Antitoxin |
| - | 3437084..3437187 | + | 104 | - | - | Toxin |
| CA210_RS29115 | 3437491..3437634 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| CA210_RS19205 | 3437755..3438726 | - | 972 | WP_172418212.1 | DUF535 family protein | - |
| CA210_RS19210 | 3438869..3439513 | + | 645 | WP_088883847.1 | protein-serine/threonine phosphatase | - |
| CA210_RS19215 | 3439519..3439710 | - | 192 | WP_015584014.1 | YebW family protein | - |
| CA210_RS19220 | 3439804..3440043 | - | 240 | WP_004863958.1 | YebV family protein | - |
| CA210_RS19225 | 3440158..3441591 | - | 1434 | WP_088883848.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T76451 NZ_CP021329:3437084-3437187 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT76451 NZ_CP021329:c3437192-3437026 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
