Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2740528..2740796 | Replicon | chromosome |
| Accession | NZ_CP021179 | ||
| Organism | Escherichia coli strain 81009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2740656..2740758 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2740528..2740796 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DNNLJILF_RS13785 | 2737081..2737743 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DNNLJILF_RS13790 | 2737767..2738423 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| DNNLJILF_RS13795 | 2738525..2738755 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DNNLJILF_RS13800 | 2738894..2739268 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DNNLJILF_RS13805 | 2739272..2740144 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| DNNLJILF_RS13810 | 2740157..2740498 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2740528..2740796 | - | 269 | - | - | Antitoxin |
| - | 2740656..2740758 | + | 103 | - | - | Toxin |
| DNNLJILF_RS13815 | 2740893..2741549 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| DNNLJILF_RS13820 | 2741550..2741741 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DNNLJILF_RS13825 | 2741846..2742082 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DNNLJILF_RS13830 | 2742199..2743638 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T76198 NZ_CP021179:2740656-2740758 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT76198 NZ_CP021179:c2740796-2740528 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
