Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3645214..3645485 | Replicon | chromosome |
| Accession | NZ_CP021175 | ||
| Organism | Escherichia coli strain 5CRE51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3645344..3645447 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3645214..3645485 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA593_RS18730 | 3641769..3642431 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CA593_RS18735 | 3642455..3643111 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CA593_RS18740 | 3643213..3643443 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CA593_RS18745 | 3643582..3643956 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CA593_RS18750 | 3643960..3644832 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| CA593_RS18755 | 3644845..3645186 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3645214..3645485 | - | 272 | - | - | Antitoxin |
| - | 3645344..3645447 | + | 104 | - | - | Toxin |
| CA593_RS18760 | 3645582..3646238 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CA593_RS18765 | 3646239..3646430 | - | 192 | WP_000457842.1 | YebW family protein | - |
| CA593_RS18770 | 3646535..3646771 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CA593_RS18775 | 3646889..3648328 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T76164 NZ_CP021175:3645344-3645447 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT76164 NZ_CP021175:c3645485-3645214 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
