Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsdAT/-
Location 2114124..2114638 Replicon chromosome
Accession NZ_CP021171
Organism Staphylococcus aureus strain CHU15-056

Toxin (Protein)


Gene name TsdT Uniprot ID T1YA99
Locus tag B5M25_RS10945 Protein ID WP_000581792.1
Coordinates 2114124..2114333 (-) Length 70 a.a.

Antitoxin (Protein)


Gene name TsdA Uniprot ID W8UW13
Locus tag B5M25_RS10950 Protein ID WP_000138932.1
Coordinates 2114345..2114638 (-) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B5M25_RS10925 2109632..2110990 - 1359 WP_000611464.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
B5M25_RS10930 2111005..2112075 - 1071 WP_000159631.1 D-alanine--D-alanine ligase -
B5M25_RS10935 2112393..2113595 + 1203 WP_001109939.1 rod shape-determining protein RodA -
B5M25_RS10940 2113859..2113996 - 138 WP_000828354.1 hypothetical protein -
B5M25_RS10945 2114124..2114333 - 210 WP_000581792.1 heavy-metal-associated domain-containing protein Toxin
B5M25_RS10950 2114345..2114638 - 294 WP_000138932.1 copper-sensing transcriptional repressor CsoR Antitoxin
B5M25_RS10955 2114804..2116288 + 1485 WP_000571549.1 cardiolipin synthase -
B5M25_RS10960 2116316..2116963 + 648 WP_001187630.1 HD domain-containing protein -
B5M25_RS10980 2117776..2118648 - 873 WP_000725802.1 membrane protein insertase YidC -
B5M25_RS10985 2118734..2119375 - 642 WP_000483153.1 thiamine phosphate synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Heavy metal-associated domain, HMA

(23-66)

Antitoxin

Metal-sensitive transcriptional repressor

(14-92)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7843.77 Da        Isoelectric Point: 4.1008

>T76142 WP_000581792.1 NZ_CP021171:c2114333-2114124 [Staphylococcus aureus]
MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVNINIIDGQVTVSYETPANLNSIEKEIYDEGYKIVF

Download         Length: 210 bp

>T76142 NZ_CP021171:c2114333-2114124 [Staphylococcus aureus]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGAATATTAATATAATAGATGGTCAAGTAACTGTATCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11197.82 Da        Isoelectric Point: 6.2243

>AT76142 WP_000138932.1 NZ_CP021171:c2114638-2114345 [Staphylococcus aureus]
MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQ
EEAMEELLVTFQKLIKD

Download         Length: 294 bp

>AT76142 NZ_CP021171:c2114638-2114345 [Staphylococcus aureus]
ATGACTGAACAAGATAATGCACATCATTCTGAACAAATAAAAACGAATCTTAAATCACGTTTAAATCGAATTGAAGGACA
AGTGAGAGCGATTAATCGCATGATTGAAGAAGATGTCTATTGTGATGATGTCCTTACGCAAATAAGAGCGACACGTTCGG
CGTTAAACAGTGTTGCGATAAAGTTATTAGAACAACATATGAAAAGTTGTATTATGAATAAAGTTAATCAAGGTGCTCAG
GAAGAGGCAATGGAAGAGTTATTAGTGACTTTTCAAAAATTGATTAAAGACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6FF1

Antitoxin

Source ID Structure
AlphaFold DB W8UW13

References