Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1865192..1865337 | Replicon | chromosome |
| Accession | NZ_CP021165 | ||
| Organism | Klebsiella pneumoniae strain 203 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1865228..1865330 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1865192..1865337 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BH367_RS09305 | 1860322..1862382 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BH367_RS09310 | 1862386..1863045 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BH367_RS09315 | 1863124..1863354 | - | 231 | WP_048254886.1 | DNA polymerase III subunit theta | - |
| BH367_RS09320 | 1863467..1863841 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BH367_RS09325 | 1863845..1864714 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| BH367_RS09330 | 1864731..1865069 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1865192..1865337 | - | 146 | - | - | Antitoxin |
| - | 1865228..1865330 | + | 103 | - | - | Toxin |
| BH367_RS27455 | 1865705..1865848 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BH367_RS09340 | 1865953..1866921 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BH367_RS09345 | 1867078..1867731 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| BH367_RS09350 | 1867728..1867919 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BH367_RS09355 | 1868017..1868256 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BH367_RS09360 | 1868372..1869805 | - | 1434 | WP_071081310.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T76095 NZ_CP021165:1865228-1865330 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT76095 NZ_CP021165:c1865337-1865192 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
