Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2788774..2788975 | Replicon | chromosome |
| Accession | NZ_CP021162 | ||
| Organism | Enterobacter hormaechei strain 234 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2788779..2788882 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2788774..2788975 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BET69_RS13610 | 2785040..2786482 | + | 1443 | WP_072204417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BET69_RS13615 | 2786589..2786828 | + | 240 | WP_003859885.1 | YebV family protein | - |
| BET69_RS13620 | 2786863..2787507 | - | 645 | WP_023314334.1 | protein-serine/threonine phosphatase | - |
| BET69_RS13625 | 2787675..2788655 | + | 981 | WP_110108499.1 | VirK/YbjX family protein | - |
| BET69_RS13630 | 2788701..2788898 | + | 198 | WP_110108500.1 | hypothetical protein | - |
| - | 2788774..2788975 | + | 202 | - | - | Antitoxin |
| - | 2788779..2788882 | - | 104 | - | - | Toxin |
| BET69_RS13635 | 2789024..2789362 | - | 339 | WP_003859787.1 | YebY family protein | - |
| BET69_RS13640 | 2789379..2790248 | - | 870 | WP_045341063.1 | copper homeostasis membrane protein CopD | - |
| BET69_RS13645 | 2790250..2790621 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| BET69_RS13650 | 2790759..2790989 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| BET69_RS13655 | 2791101..2791751 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| BET69_RS13660 | 2791776..2792438 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T76065 NZ_CP021162:c2788882-2788779 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT76065 NZ_CP021162:2788774-2788975 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
