Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 501226..501460 | Replicon | chromosome |
| Accession | NZ_CP021144 | ||
| Organism | Shigella sonnei strain 2015AM-1099 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 501356..501459 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 501226..501460 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9127_RS02875 | 497780..498442 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| B9127_RS02880 | 498466..499122 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| B9127_RS02885 | 499225..499455 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B9127_RS02890 | 499594..499968 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| B9127_RS02895 | 499972..500844 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| B9127_RS02900 | 500857..501198 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 501226..501460 | - | 235 | - | - | Antitoxin |
| - | 501356..501459 | + | 104 | - | - | Toxin |
| B9127_RS02905 | 501591..502667 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| B9127_RS02910 | 502704..502949 | - | 246 | Protein_521 | IS1 family transposase | - |
| B9127_RS02920 | 504283..504737 | - | 455 | Protein_523 | IS1-like element IS1A family transposase | - |
| B9127_RS02925 | 504766..505026 | - | 261 | WP_077447296.1 | excisionase | - |
| B9127_RS02930 | 505171..506327 | + | 1157 | WP_087879964.1 | IS3-like element IS600 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T76033 NZ_CP021144:501356-501459 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT76033 NZ_CP021144:c501460-501226 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
