Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 309029..309564 Replicon plasmid pRetKim5c
Accession NZ_CP021127
Organism Rhizobium sp. Kim5

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag KIM5_RS28605 Protein ID WP_077989089.1
Coordinates 309029..309304 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag KIM5_RS28610 Protein ID WP_077989164.1
Coordinates 309304..309564 (-) Length 87 a.a.

Genomic Context

KIM5_RS28600KIM5_RS28615KIM5_RS28620KIM5_RS28625KIM5_RS28630KIM5_RS28585KIM5_RS28590KIM5_RS28595KIM5_RS28605KIM5_RS28610
Location: 307957..308964 (1008 bp)
Type: Others
Protein ID: WP_077989090.1
Location: 309757..310485 (729 bp)
Type: Others
Protein ID: WP_077989088.1
Location: 310763..311776 (1014 bp)
Type: Others
Protein ID: WP_077989087.1
Location: 311870..312688 (819 bp)
Type: Others
Protein ID: WP_077989086.1
Location: 312700..313581 (882 bp)
Type: Others
Protein ID: WP_077989085.1
Location: 304214..305140 (927 bp)
Type: Others
Protein ID: WP_077989091.1
Location: 305178..306401 (1224 bp)
Type: Others
Protein ID: WP_040141860.1
Location: 306450..307781 (1332 bp)
Type: Others
Protein ID: WP_086156642.1
Location: 309029..309304 (276 bp)
Type: Toxin
Protein ID: WP_077989089.1
Location: 309304..309564 (261 bp)
Type: Antitoxin
Protein ID: WP_077989164.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
KIM5_RS28585304214..305140-927WP_077989091.1sugar ABC transporter permease-
KIM5_RS28590305178..306401-1224WP_040141860.1sugar ABC transporter substrate-binding protein-
KIM5_RS28595306450..307781-1332WP_086156642.1alpha-L-fucosidase-
KIM5_RS28600307957..308964+1008WP_077989090.1LacI family transcriptional regulator-
KIM5_RS28605309029..309304-276WP_077989089.1type II toxin-antitoxin system RelE/ParE family toxinToxin
KIM5_RS28610309304..309564-261WP_077989164.1ribbon-helix-helix domain-containing proteinAntitoxin
KIM5_RS28615309757..310485+729WP_077989088.1FadR family transcriptional regulator-
KIM5_RS28620310763..311776+1014WP_077989087.1ABC transporter substrate-binding protein-
KIM5_RS28625311870..312688+819WP_077989086.1ABC transporter ATP-binding protein-
KIM5_RS28630312700..313581+882WP_077989085.1ABC transporter permease-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..655866655866


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(6-43)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10943.63 Da        Isoelectric Point: 9.9706

>T76021 WP_077989089.1 NZ_CP021127:c309304-309029 [Rhizobium sp. Kim5]
MELKWTSKAVSDIDRLYAFIAPVNRQVAARTVQALTTAPLRLLEQPRLGERLEEFDPREVRRILVGRYELRYEIQQSVIY
VLRFWHTREDR

Download         Length: 276 bp

>T76021 NZ_CP021127:c309304-309029 [Rhizobium sp. Kim5]
ATGGAACTTAAGTGGACGAGCAAAGCGGTCTCGGACATTGATCGCCTTTATGCCTTTATCGCGCCGGTTAATCGACAGGT
GGCGGCCCGGACTGTGCAGGCGTTGACGACGGCGCCTCTACGGCTGCTTGAGCAGCCACGCCTTGGTGAGCGGCTGGAGG
AGTTCGATCCTCGAGAGGTTCGCCGCATTCTCGTTGGCCGATATGAGCTGCGTTACGAAATCCAGCAGTCGGTCATCTAT
GTATTGCGGTTCTGGCATACGCGTGAAGATCGGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9654.93 Da        Isoelectric Point: 4.7778

>AT76021 WP_077989164.1 NZ_CP021127:c309564-309304 [Rhizobium sp. Kim5]
METKVLTAHVPLPLAQKVDQLAVRLERSRGWIVKQALTAWIDQEEERRRLTLEALADVDSGNVIDHQSVQAWADSLDSDA
PVSLPR

Download         Length: 261 bp

>AT76021 NZ_CP021127:c309564-309304 [Rhizobium sp. Kim5]
ATGGAAACTAAAGTGCTGACCGCGCACGTGCCTCTACCCCTCGCGCAGAAGGTCGATCAACTCGCAGTGAGACTTGAGCG
CTCGCGCGGCTGGATCGTCAAGCAGGCGCTGACGGCGTGGATCGACCAAGAGGAGGAACGGCGACGTTTGACGCTTGAGG
CGCTGGCTGATGTGGACAGCGGCAACGTCATCGATCACCAGTCCGTCCAGGCTTGGGCTGATAGCCTCGACAGCGATGCG
CCGGTTTCATTGCCTCGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References