Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 212490..213034 Replicon chromosome
Accession NZ_CP021124
Organism Rhizobium sp. Kim5

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag KIM5_RS00995 Protein ID WP_077995049.1
Coordinates 212744..213034 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag KIM5_RS00990 Protein ID WP_009994620.1
Coordinates 212490..212741 (+) Length 84 a.a.

Genomic Context

KIM5_RS00965KIM5_RS00970KIM5_RS00975KIM5_RS00990KIM5_RS00995KIM5_RS01005KIM5_RS01010KIM5_RS01015KIM5_RS01020KIM5_RS00980KIM5_RS00985KIM5_RS34095
Location: 208509..209468 (960 bp)
Type: Others
Protein ID: WP_077995051.1
Location: 209669..210049 (381 bp)
Type: Others
Protein ID: WP_009982537.1
Location: 210216..211520 (1305 bp)
Type: Others
Protein ID: WP_077995050.1
Location: 212490..212741 (252 bp)
Type: Antitoxin
Protein ID: WP_009994620.1
Location: 212744..213034 (291 bp)
Type: Toxin
Protein ID: WP_077995049.1
Location: 213384..213701 (318 bp)
Type: Others
Protein ID: WP_038686170.1
Location: 214009..215001 (993 bp)
Type: Others
Protein ID: WP_077995048.1
Location: 215090..216601 (1512 bp)
Type: Others
Protein ID: WP_039617281.1
Location: 216609..217712 (1104 bp)
Type: Others
Protein ID: WP_086155861.1
Location: 211517..211741 (225 bp)
Type: Others
Protein ID: WP_010057833.1
Location: 212068..212277 (210 bp)
Type: Others
Protein ID: WP_009994618.1
Location: 213691..213852 (162 bp)
Type: Others
Protein ID: WP_164519016.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
KIM5_RS00965208509..209468+960WP_077995051.1glyoxylate/hydroxypyruvate reductase A-
KIM5_RS00970209669..210049+381WP_009982537.1hypothetical protein-
KIM5_RS00975210216..211520+1305WP_077995050.1nicotinate phosphoribosyltransferase-
KIM5_RS00980211517..211741-225WP_010057833.1hypothetical protein-
KIM5_RS00985212068..212277-210WP_009994618.1KTSC domain-containing protein-
KIM5_RS00990212490..212741+252WP_009994620.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
KIM5_RS00995212744..213034+291WP_077995049.1type II toxin-antitoxin system RelE/ParE family toxinToxin
KIM5_RS01005213384..213701+318WP_038686170.1hypothetical protein-
KIM5_RS34095213691..213852-162WP_164519016.1hypothetical protein-
KIM5_RS01010214009..215001+993WP_077995048.1BMP family ABC transporter substrate-binding protein-
KIM5_RS01015215090..216601+1512WP_039617281.1ABC transporter ATP-binding protein-
KIM5_RS01020216609..217712+1104WP_086155861.1ABC transporter permease-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10964.48 Da        Isoelectric Point: 6.1262

>T76014 WP_077995049.1 NZ_CP021124:212744-213034 [Rhizobium sp. Kim5]
MGFRLAEEAEEDIVGIAETGIRLFGSAHARRYHDELYAIFDLIAANPRMARERHEISPPMCIHPFKAHLVVYTIAEGDNV
LIVRIRHGHEDWSSQV

Download         Length: 291 bp

>T76014 NZ_CP021124:212744-213034 [Rhizobium sp. Kim5]
ATGGGCTTTCGCCTTGCGGAAGAAGCGGAAGAGGACATTGTCGGCATAGCCGAAACGGGCATTCGCCTGTTTGGCTCAGC
GCACGCTCGGCGCTACCATGATGAACTCTACGCCATTTTTGATCTGATTGCTGCCAATCCCCGTATGGCGCGCGAACGGC
ATGAAATTTCTCCTCCGATGTGCATTCATCCGTTCAAGGCCCATCTCGTCGTTTATACGATTGCGGAGGGCGATAATGTT
CTCATTGTCCGTATTCGCCACGGACACGAAGATTGGTCCAGTCAGGTTTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9382.42 Da        Isoelectric Point: 6.3583

>AT76014 WP_009994620.1 NZ_CP021124:212490-212741 [Rhizobium sp. Kim5]
MATMNVSLPDPMKDWVEAQTKTGRYANASDYVRDLIRKDQERNDKVAAMQRFVDEGLKSGVGSRSKDELFEAARAREESS
RGN

Download         Length: 252 bp

>AT76014 NZ_CP021124:212490-212741 [Rhizobium sp. Kim5]
ATGGCGACCATGAACGTATCGCTGCCCGATCCCATGAAAGATTGGGTGGAAGCGCAAACCAAAACAGGCCGTTATGCCAA
TGCGAGCGATTATGTCCGCGACCTCATCAGGAAAGATCAGGAGCGAAACGACAAGGTCGCAGCTATGCAGCGCTTTGTCG
ATGAAGGCTTGAAGAGCGGCGTCGGGTCGCGGTCGAAGGACGAGCTGTTTGAGGCTGCTCGGGCGCGCGAGGAAAGCTCT
CGCGGCAATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References