Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YoeB-YefM |
Location | 2783895..2784465 | Replicon | chromosome |
Accession | NZ_CP021056 | ||
Organism | Richelia sinica FACHB-800 strain FACHB 800 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | B6N60_RS11760 | Protein ID | WP_190606892.1 |
Coordinates | 2784166..2784465 (+) | Length | 100 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | B6N60_RS11755 | Protein ID | WP_190606890.1 |
Coordinates | 2783895..2784185 (+) | Length | 97 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
B6N60_RS11740 (B6N60_02602) | 2779872..2781176 | - | 1305 | WP_190606885.1 | SPFH domain-containing protein | - |
B6N60_RS11745 (B6N60_02603) | 2782198..2782563 | + | 366 | WP_190606887.1 | colicin E3/pyocin S6 family cytotoxin | - |
B6N60_RS11750 (B6N60_02604) | 2783026..2783775 | + | 750 | WP_190606888.1 | DUF5677 domain-containing protein | - |
B6N60_RS11755 (B6N60_02605) | 2783895..2784185 | + | 291 | WP_190606890.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
B6N60_RS11760 (B6N60_02606) | 2784166..2784465 | + | 300 | WP_190606892.1 | Txe/YoeB family addiction module toxin | Toxin |
B6N60_RS11765 (B6N60_02607) | 2784551..2785405 | - | 855 | WP_190606894.1 | sulfite exporter TauE/SafE family protein | - |
B6N60_RS11770 (B6N60_02608) | 2785402..2785947 | - | 546 | WP_190606896.1 | rhodanese-like domain-containing protein | - |
B6N60_RS11775 (B6N60_02609) | 2786002..2786691 | - | 690 | WP_190606898.1 | MBL fold metallo-hydrolase | - |
B6N60_RS11780 (B6N60_02610) | 2787064..2787765 | + | 702 | WP_190606902.1 | 4Fe-4S dicluster domain-containing protein | - |
B6N60_RS11785 (B6N60_02611) | 2787920..2788966 | + | 1047 | WP_190606904.1 | heterodisulfide reductase-related iron-sulfur binding cluster | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11937.62 Da Isoelectric Point: 7.3170
>T75925 WP_190606892.1 NZ_CP021056:2784166-2784465 [Richelia sinica FACHB-800]
MTQKKNEPKPQEIKVRDAVFHPEFREDLVYWVETNRKTALRAFDLIEAIMRDPFTGVGKPEPLKYLDSDAWSRRLTQEHR
IVYLISDDRIDFLQARFHY
MTQKKNEPKPQEIKVRDAVFHPEFREDLVYWVETNRKTALRAFDLIEAIMRDPFTGVGKPEPLKYLDSDAWSRRLTQEHR
IVYLISDDRIDFLQARFHY
Download Length: 300 bp
>T75925 NZ_CP021056:2784166-2784465 [Richelia sinica FACHB-800]
TTGACACAGAAGAAGAATGAACCCAAACCCCAAGAAATTAAAGTTCGGGATGCTGTCTTTCATCCAGAATTTAGGGAAGA
CCTTGTTTATTGGGTGGAGACAAACCGTAAAACTGCGCTCCGTGCTTTTGATTTAATTGAAGCAATTATGCGAGATCCTT
TTACTGGTGTTGGTAAACCAGAACCTCTGAAATATTTAGATTCAGATGCGTGGTCACGAAGACTTACTCAAGAACATCGA
ATTGTTTATCTAATTAGTGATGACAGAATTGATTTCTTACAAGCTAGATTTCATTATTGA
TTGACACAGAAGAAGAATGAACCCAAACCCCAAGAAATTAAAGTTCGGGATGCTGTCTTTCATCCAGAATTTAGGGAAGA
CCTTGTTTATTGGGTGGAGACAAACCGTAAAACTGCGCTCCGTGCTTTTGATTTAATTGAAGCAATTATGCGAGATCCTT
TTACTGGTGTTGGTAAACCAGAACCTCTGAAATATTTAGATTCAGATGCGTGGTCACGAAGACTTACTCAAGAACATCGA
ATTGTTTATCTAATTAGTGATGACAGAATTGATTTCTTACAAGCTAGATTTCATTATTGA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10681.97 Da Isoelectric Point: 4.2182
>AT75925 WP_190606890.1 NZ_CP021056:2783895-2784185 [Richelia sinica FACHB-800]
MSNQTNLTDARNNLADICAQVVADREIMIITRPEGENVALIAADELESLLETTHLLRSPNNAARLLTALERAKTRTLNPQ
SINELRQELGIDTEEE
MSNQTNLTDARNNLADICAQVVADREIMIITRPEGENVALIAADELESLLETTHLLRSPNNAARLLTALERAKTRTLNPQ
SINELRQELGIDTEEE
Download Length: 291 bp
>AT75925 NZ_CP021056:2783895-2784185 [Richelia sinica FACHB-800]
ATGTCCAACCAAACAAACTTAACCGATGCTCGTAATAACCTAGCTGACATCTGCGCTCAAGTAGTTGCAGATAGAGAAAT
AATGATTATTACCCGACCAGAAGGTGAAAATGTCGCCTTAATTGCTGCTGACGAATTAGAAAGTTTATTAGAAACCACTC
ATTTACTACGCTCACCAAACAATGCAGCGCGTCTTTTAACAGCTTTAGAAAGAGCAAAAACTAGAACTTTAAATCCCCAA
AGTATCAACGAACTACGTCAGGAGTTGGGAATTGACACAGAAGAAGAATGA
ATGTCCAACCAAACAAACTTAACCGATGCTCGTAATAACCTAGCTGACATCTGCGCTCAAGTAGTTGCAGATAGAGAAAT
AATGATTATTACCCGACCAGAAGGTGAAAATGTCGCCTTAATTGCTGCTGACGAATTAGAAAGTTTATTAGAAACCACTC
ATTTACTACGCTCACCAAACAATGCAGCGCGTCTTTTAACAGCTTTAGAAAGAGCAAAAACTAGAACTTTAAATCCCCAA
AGTATCAACGAACTACGTCAGGAGTTGGGAATTGACACAGAAGAAGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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