Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 510660..511195 Replicon plasmid pRspNXC14c
Accession NZ_CP021033
Organism Rhizobium sp. NXC14

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NXC14_RS30410 Protein ID WP_085782063.1
Coordinates 510660..510935 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NXC14_RS30415 Protein ID WP_085782064.1
Coordinates 510935..511195 (-) Length 87 a.a.

Genomic Context

NXC14_RS30405NXC14_RS30420NXC14_RS30425NXC14_RS30430NXC14_RS30390NXC14_RS30395NXC14_RS30400NXC14_RS30410NXC14_RS30415NXC14_RS33230NXC14_RS30435
Location: 509646..510653 (1008 bp)
Type: Others
Protein ID: WP_085781723.1
Location: 511726..512739 (1014 bp)
Type: Others
Protein ID: WP_085781724.1
Location: 512836..513654 (819 bp)
Type: Others
Protein ID: WP_085781725.1
Location: 513666..514547 (882 bp)
Type: Others
Protein ID: WP_085781726.1
Location: 505864..506790 (927 bp)
Type: Others
Protein ID: WP_085782062.1
Location: 506843..508066 (1224 bp)
Type: Others
Protein ID: WP_085781721.1
Location: 508116..509435 (1320 bp)
Type: Others
Protein ID: WP_085781722.1
Location: 510660..510935 (276 bp)
Type: Toxin
Protein ID: WP_085782063.1
Location: 510935..511195 (261 bp)
Type: Antitoxin
Protein ID: WP_085782064.1
Location: 511315..511503 (189 bp)
Type: Others
Protein ID: WP_198175580.1
Location: 514624..516021 (1398 bp)
Type: Others
Protein ID: WP_085781727.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NXC14_RS30390505864..506790-927WP_085782062.1sugar ABC transporter permease-
NXC14_RS30395506843..508066-1224WP_085781721.1sugar ABC transporter substrate-binding protein-
NXC14_RS30400508116..509435-1320WP_085781722.1alpha-L-fucosidase-
NXC14_RS30405509646..510653+1008WP_085781723.1LacI family transcriptional regulator-
NXC14_RS30410510660..510935-276WP_085782063.1type II toxin-antitoxin system RelE/ParE family toxinToxin
NXC14_RS30415510935..511195-261WP_085782064.1ribbon-helix-helix domain-containing proteinAntitoxin
NXC14_RS33230511315..511503-189WP_198175580.1hypothetical protein-
NXC14_RS30420511726..512739+1014WP_085781724.1ABC transporter substrate-binding protein-
NXC14_RS30425512836..513654+819WP_085781725.1ABC transporter ATP-binding protein-
NXC14_RS30430513666..514547+882WP_085781726.1ABC transporter permease-
NXC14_RS30435514624..516021-1398WP_085781727.1sensor histidine kinase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..889015889015


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(6-43)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10770.35 Da        Isoelectric Point: 9.6906

>T75917 WP_085782063.1 NZ_CP021033:c510935-510660 [Rhizobium sp. NXC14]
IEVKWTSKAVSDIVRLNDFLSPVDRRPAARTVQALTAAPARLLEQPRLGERLEEFDPREVRRILVGRYELPYEIQQSTIY
VLRLWHTREDR

Download         Length: 276 bp

>T75917 NZ_CP021033:c510935-510660 [Rhizobium sp. NXC14]
ATCGAAGTCAAGTGGACGAGCAAAGCGGTCTCGGACATCGTCCGCTTAAACGACTTTCTCTCCCCGGTCGACCGACGCCC
CGCGGCCCGAACTGTACAGGCACTGACGGCAGCCCCCGCACGGCTGCTCGAACAGCCGCGTCTCGGCGAACGGCTTGAGG
AGTTCGATCCTCGTGAGGTCCGCCGCATTCTCGTTGGCCGTTATGAGCTACCCTACGAAATCCAGCAGTCGACGATCTAC
GTATTGCGGCTTTGGCATACGCGTGAGGATCGGTAG

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9701.97 Da        Isoelectric Point: 5.0623

>AT75917 WP_085782064.1 NZ_CP021033:c511195-510935 [Rhizobium sp. NXC14]
VETKVLTAHVPLPLAQKVDQLASRLERSRGWIVKQALTAWIDQEEERRRLTLEALADVNSGKVVDHQSVQAWADSLDTDA
PISFPW

Download         Length: 261 bp

>AT75917 NZ_CP021033:c511195-510935 [Rhizobium sp. NXC14]
GTGGAGACTAAAGTTCTGACGGCCCATGTTCCATTGCCGCTTGCGCAGAAGGTCGATCAGCTCGCATCTCGGCTCGAACG
TTCGCGGGGCTGGATCGTCAAGCAGGCCCTGACTGCATGGATTGACCAGGAAGAGGAGCGCCGGCGTTTGACGCTTGAGG
CGTTGGCCGACGTGAATAGCGGCAAAGTTGTCGATCACCAGTCTGTTCAAGCCTGGGCCGATAGTCTCGATACCGACGCG
CCGATTTCATTCCCCTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
No matching records found

References