Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 11397..12064 Replicon plasmid pRspNXC14c
Accession NZ_CP021033
Organism Rhizobium sp. NXC14

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag NXC14_RS28025 Protein ID WP_085781306.1
Coordinates 11397..11807 (-) Length 137 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag NXC14_RS28030 Protein ID WP_085781307.1
Coordinates 11804..12064 (-) Length 87 a.a.

Genomic Context

NXC14_RS28015NXC14_RS28020NXC14_RS28055NXC14_RS28065NXC14_RS28010NXC14_RS28025NXC14_RS28030NXC14_RS28035NXC14_RS28045NXC14_RS28050NXC14_RS28060
Location: 7848..10034 (2187 bp)
Type: Others
Protein ID: WP_085782023.1
Location: 10576..11301 (726 bp)
Type: Others
Protein ID: WP_085781305.1
Location: 14361..15236 (876 bp)
Type: Others
Protein ID: WP_085782024.1
Location: 16330..16746 (417 bp)
Type: Others
Protein ID: WP_085781311.1
Location: 6790..7704 (915 bp)
Type: Others
Protein ID: WP_085781304.1
Location: 11397..11807 (411 bp)
Type: Toxin
Protein ID: WP_085781306.1
Location: 11804..12064 (261 bp)
Type: Antitoxin
Protein ID: WP_085781307.1
Location: 12140..12697 (558 bp)
Type: Others
Protein ID: WP_085781308.1
Location: 12967..13539 (573 bp)
Type: Others
Protein ID: WP_085781309.1
Location: 13550..14254 (705 bp)
Type: Others
Protein ID: WP_085781310.1
Location: 15308..16276 (969 bp)
Type: Others
Protein ID: WP_085782025.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NXC14_RS280106790..7704-915WP_085781304.1hydrogen peroxide-inducible genes activator-
NXC14_RS280157848..10034+2187WP_085782023.1catalase/peroxidase HPI-
NXC14_RS2802010576..11301+726WP_085781305.1SDR family oxidoreductase-
NXC14_RS2802511397..11807-411WP_085781306.1type II toxin-antitoxin system VapC family toxinToxin
NXC14_RS2803011804..12064-261WP_085781307.1antitoxinAntitoxin
NXC14_RS2803512140..12697-558WP_085781308.1DUF3299 domain-containing protein-
NXC14_RS2804512967..13539-573WP_085781309.1pyridoxamine 5'-phosphate oxidase family protein-
NXC14_RS2805013550..14254-705WP_085781310.1SDR family oxidoreductase-
NXC14_RS2805514361..15236+876WP_085782024.1LysR family transcriptional regulator-
NXC14_RS2806015308..16276-969WP_085782025.1zinc-dependent alcohol dehydrogenase family protein-
NXC14_RS2806516330..16746+417WP_085781311.1acyl-CoA thioesterase-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..889015889015


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-126)

Antitoxin

SpoVT-AbrB domain

(8-45)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 14911.15 Da        Isoelectric Point: 5.1787

>T75916 WP_085781306.1 NZ_CP021033:c11807-11397 [Rhizobium sp. NXC14]
VITHLIDTNAVIALIGRKSDMLLAHVMDSDEGSIGLSSIVMHELYYGAYKSAKISYNLETLRLFMADFPTVGFEREDALA
AGEIRAALAAKGTPIGPYDVLLAAQAKTRDLVLITNNVGEFRRVDGLRVEDWTTVR

Download         Length: 411 bp

>T75916 NZ_CP021033:c11807-11397 [Rhizobium sp. NXC14]
GTGATCACTCATCTCATCGATACCAATGCGGTTATCGCTCTGATCGGCCGGAAGTCCGACATGCTGCTCGCCCACGTCAT
GGACAGCGACGAGGGATCGATCGGGCTGTCGAGCATCGTCATGCACGAGCTCTATTACGGCGCCTACAAGAGCGCGAAAA
TTTCCTACAATCTCGAAACCCTGCGCCTGTTCATGGCGGATTTCCCGACCGTCGGTTTCGAGCGCGAGGATGCGCTGGCC
GCTGGAGAGATCCGCGCGGCGTTGGCGGCAAAGGGAACACCGATCGGTCCTTATGATGTGCTGTTAGCCGCGCAGGCGAA
GACGCGGGACCTTGTTCTTATTACGAACAACGTCGGGGAGTTCCGGCGCGTGGATGGCCTGCGCGTCGAGGATTGGACGA
CCGTGCGGTAG

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9908.98 Da        Isoelectric Point: 4.8605

>AT75916 WP_085781307.1 NZ_CP021033:c12064-11804 [Rhizobium sp. NXC14]
MPQYARVFQSGNSQAVRLPKEFRFDVDQVEVTREGDAIILRPRTDHGGRWASLRSALERGLSDDFMAEGREQPEDQERTG
LQDLFK

Download         Length: 261 bp

>AT75916 NZ_CP021033:c12064-11804 [Rhizobium sp. NXC14]
ATGCCGCAATATGCGCGCGTCTTTCAATCCGGCAATTCGCAGGCCGTCCGGCTGCCGAAGGAGTTTCGCTTCGACGTCGA
TCAGGTGGAAGTGACACGGGAAGGCGATGCGATCATTCTGCGGCCGCGGACCGATCACGGCGGCCGCTGGGCCTCGTTGC
GCAGCGCCCTGGAGCGCGGCCTCAGCGACGATTTCATGGCGGAGGGACGTGAGCAGCCAGAAGATCAGGAGAGAACTGGC
CTTCAGGACTTGTTCAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References