Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 1573733..1574270 Replicon chromosome
Accession NZ_CP021018
Organism Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6167

Toxin (Protein)


Gene name relE Uniprot ID A0A7X9YU06
Locus tag XcfCFBP6167P_RS06960 Protein ID WP_017158383.1
Coordinates 1573989..1574270 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A7X9UWY6
Locus tag XcfCFBP6167P_RS06955 Protein ID WP_017158384.1
Coordinates 1573733..1574002 (+) Length 90 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XcfCFBP6167P_RS06925 1568995..1569603 + 609 WP_017154888.1 hypothetical protein -
XcfCFBP6167P_RS06930 1569716..1570348 + 633 WP_007966093.1 ParA family protein -
XcfCFBP6167P_RS06935 1570341..1570673 + 333 WP_007966095.1 hypothetical protein -
XcfCFBP6167P_RS06940 1570740..1571024 + 285 WP_017154887.1 hypothetical protein -
XcfCFBP6167P_RS06945 1571031..1572218 + 1188 WP_046735718.1 zeta toxin family protein -
XcfCFBP6167P_RS06950 1572662..1573624 + 963 WP_022560476.1 recombinase family protein -
XcfCFBP6167P_RS06955 1573733..1574002 + 270 WP_017158384.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
XcfCFBP6167P_RS06960 1573989..1574270 + 282 WP_017158383.1 type II toxin-antitoxin system YafQ family toxin Toxin
XcfCFBP6167P_RS06965 1574408..1574805 - 398 Protein_1300 hypothetical protein -
XcfCFBP6167P_RS06970 1574851..1575558 - 708 WP_022560478.1 hypothetical protein -
XcfCFBP6167P_RS06975 1575555..1576001 - 447 WP_033481413.1 hypothetical protein -
XcfCFBP6167P_RS06980 1576347..1576742 + 396 WP_022560480.1 hypothetical protein -
XcfCFBP6167P_RS06985 1576840..1577109 + 270 WP_033481412.1 hypothetical protein -
XcfCFBP6167P_RS06990 1577106..1577399 + 294 WP_046735719.1 type II toxin-antitoxin system RelE/ParE family toxin -
XcfCFBP6167P_RS06995 1577512..1578132 + 621 WP_011345593.1 hypothetical protein -
XcfCFBP6167P_RS07000 1578331..1578672 + 342 WP_029561219.1 hypothetical protein -
XcfCFBP6167P_RS07005 1578744..1578941 + 198 WP_022560481.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(2-93)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(7-86)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10679.06 Da        Isoelectric Point: 8.9188

>T75898 WP_017158383.1 NZ_CP021018:1573989-1574270 [Xanthomonas citri pv. phaseoli var. fuscans]
MRTIDRSSAFKRDYKREAKGQHRATLDDAIKPVLVALATDQPPDARYRDHDLSGDWAGYRECHIKPDLLLIYRKSDPDTL
RLARLGSHSELFG

Download         Length: 282 bp

>T75898 NZ_CP021018:1573989-1574270 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGCGGACGATTGACCGTTCATCCGCTTTCAAGCGCGACTACAAGCGGGAAGCCAAGGGGCAGCATCGCGCCACGCTTGA
TGACGCGATCAAGCCGGTGTTGGTCGCACTGGCGACCGATCAGCCTCCCGATGCACGCTATCGCGATCACGATCTTTCCG
GCGATTGGGCGGGCTATCGGGAATGTCACATCAAGCCTGACTTGCTGCTGATCTACCGCAAGTCCGACCCCGACACCCTG
CGACTGGCACGGCTTGGCTCGCACAGCGAGCTTTTCGGCTGA

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 9719.10 Da        Isoelectric Point: 5.6976

>AT75898 WP_017158384.1 NZ_CP021018:1573733-1574002 [Xanthomonas citri pv. phaseoli var. fuscans]
MSTTADTYVRARIDTATKERAASALEAMGLSISDAIRLLMLRIADEHRLPFDVKVPNTTTKKAIAELESGKGKKFANVDD
LMADLHADD

Download         Length: 270 bp

>AT75898 NZ_CP021018:1573733-1574002 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGAGCACTACCGCCGATACCTACGTCCGCGCCCGCATCGACACCGCCACCAAGGAACGTGCCGCTAGTGCGCTCGAAGC
AATGGGGCTGTCGATCTCTGATGCTATCCGCCTGCTGATGCTACGCATTGCCGACGAACACCGCCTGCCCTTCGATGTGA
AGGTACCAAACACCACCACGAAAAAGGCGATTGCCGAACTGGAATCAGGCAAGGGTAAGAAGTTCGCCAATGTGGACGAC
CTGATGGCGGATTTGCATGCGGACGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7X9YU06

Antitoxin

Source ID Structure
AlphaFold DB A0A7X9UWY6

References