Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 28328..28995 Replicon plasmid pA
Accession NZ_CP020988
Organism Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6994R

Toxin (Protein)


Gene name vapC Uniprot ID A0A3T0G501
Locus tag XcfCFBP6994P_RS22745 Protein ID WP_022557732.1
Coordinates 28328..28744 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID U4M4Z6
Locus tag XcfCFBP6994P_RS22750 Protein ID WP_022557731.1
Coordinates 28741..28995 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XcfCFBP6994P_RS22720 24058..25377 + 1320 WP_022557736.1 DUF4990 domain-containing protein -
XcfCFBP6994P_RS22725 25504..26796 + 1293 WP_033481893.1 hypothetical protein -
XcfCFBP6994P_RS22730 26948..27478 + 531 Protein_26 DNA topoisomerase III -
XcfCFBP6994P_RS22735 27548..27685 + 138 Protein_27 transposase -
XcfCFBP6994P_RS22740 27760..28314 - 555 WP_033482006.1 plasmid pRiA4b ORF-3 family protein -
XcfCFBP6994P_RS22745 28328..28744 - 417 WP_022557732.1 type II toxin-antitoxin system VapC family toxin Toxin
XcfCFBP6994P_RS22750 28741..28995 - 255 WP_022557731.1 plasmid stability protein Antitoxin
XcfCFBP6994P_RS22755 29207..29800 + 594 WP_022560487.1 recombinase family protein -
XcfCFBP6994P_RS22760 29797..32826 + 3030 WP_022560486.1 Tn3 family transposase -
XcfCFBP6994P_RS22765 32859..33817 + 959 Protein_33 IS3-like element ISXcd1 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..66554 66554
- inside IScluster/Tn - - 27548..33817 6269


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-128)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14833.04 Da        Isoelectric Point: 4.6812

>T75868 WP_022557732.1 NZ_CP020988:c28744-28328 [Xanthomonas citri pv. phaseoli var. fuscans]
MIVLDTNVVSEAMKPEPHPSVRTWLNDQAAETLYLSSVTLAELLFGIAALPAGKRKDMLEQALDGLMGLFRDRVLPFDID
AARRYAELAVTAKIGGRGFPTPDGYIAAIAASRGFIVASRDTAPYEAAGVTVINPWEG

Download         Length: 417 bp

>T75868 NZ_CP020988:c28744-28328 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGATCGTTCTCGATACCAACGTCGTTTCCGAGGCGATGAAGCCCGAGCCGCACCCATCCGTGCGGACCTGGTTGAACGA
TCAAGCCGCTGAAACACTGTACCTGTCCAGCGTGACGCTGGCCGAACTGCTATTTGGCATCGCTGCGCTTCCTGCCGGTA
AGCGCAAGGACATGCTGGAACAGGCCCTTGATGGCCTCATGGGCCTGTTTAGGGATCGGGTGTTGCCATTCGACATCGAT
GCAGCGCGGCGTTATGCCGAATTGGCCGTGACGGCAAAGATCGGAGGGCGAGGATTTCCGACACCCGACGGCTACATCGC
AGCGATTGCTGCCTCGCGGGGTTTCATTGTGGCGTCACGCGACACGGCCCCTTACGAAGCGGCCGGCGTAACCGTCATCA
ATCCGTGGGAAGGGTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9388.80 Da        Isoelectric Point: 8.9326

>AT75868 WP_022557731.1 NZ_CP020988:c28995-28741 [Xanthomonas citri pv. phaseoli var. fuscans]
MAMLTVRNLPDDVHRALRMRAAQNGHSTEAEVREILATAVKPETRVRLGEALAALGRKIGLTNEDFEVFDRVRDKTPAVP
PRLE

Download         Length: 255 bp

>AT75868 NZ_CP020988:c28995-28741 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGGCAATGCTGACAGTACGTAATCTGCCGGATGATGTGCACCGCGCATTGCGCATGCGGGCCGCTCAAAATGGGCACAG
CACCGAGGCCGAGGTCCGCGAGATTCTGGCGACCGCAGTCAAGCCAGAGACGCGCGTTCGCCTAGGCGAAGCCTTGGCGG
CTTTGGGTCGCAAGATTGGCCTGACGAATGAGGACTTCGAGGTCTTCGATCGGGTAAGAGACAAGACGCCGGCCGTCCCG
CCGAGGCTTGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3T0G501

Antitoxin

Source ID Structure
AlphaFold DB A0A3T0G545

References