Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 2257478..2258076 Replicon chromosome
Accession NZ_CP020947
Organism Rhizobium sp. CIAT894

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag RHEC894_RS11185 Protein ID WP_085737312.1
Coordinates 2257478..2257771 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag RHEC894_RS11190 Protein ID WP_085737313.1
Coordinates 2257768..2258076 (-) Length 103 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RHEC894_RS11165 2253933..2255072 + 1140 WP_085738942.1 esterase-like activity of phytase family protein -
RHEC894_RS11170 2255188..2256405 + 1218 WP_085737310.1 AI-2E family transporter -
RHEC894_RS11175 2256424..2256882 - 459 WP_085737311.1 GNAT family N-acetyltransferase -
RHEC894_RS11180 2257011..2257442 + 432 WP_010065220.1 hypothetical protein -
RHEC894_RS11185 2257478..2257771 - 294 WP_085737312.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
RHEC894_RS11190 2257768..2258076 - 309 WP_085737313.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
RHEC894_RS11195 2258151..2259293 - 1143 WP_085737314.1 DUF2336 domain-containing protein -
RHEC894_RS11200 2259402..2260013 - 612 WP_085737315.1 flavin reductase family protein -
RHEC894_RS11205 2260013..2260597 - 585 WP_085738943.1 nitroreductase -
RHEC894_RS11210 2260711..2261811 + 1101 WP_085737316.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-55)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11055.69 Da        Isoelectric Point: 6.7255

>T75761 WP_085737312.1 NZ_CP020947:c2257771-2257478 [Rhizobium sp. CIAT894]
VRLVWARHALSDRDNIFAYIEAENPSAAVHVDQKIALTVRRLVDFPESGRQGRIAGIRELVIPNTPYIAAYIVLEDRIRI
LRVLHGAQIWPEDISTE

Download         Length: 294 bp

>T75761 NZ_CP020947:c2257771-2257478 [Rhizobium sp. CIAT894]
GTGAGGCTTGTCTGGGCAAGACATGCCCTATCCGACCGAGACAATATTTTCGCTTACATTGAAGCCGAAAATCCAAGCGC
TGCCGTTCACGTCGATCAGAAAATCGCTCTTACTGTCCGGCGGCTCGTCGATTTCCCAGAGAGCGGAAGGCAGGGACGAA
TCGCAGGCATACGTGAACTGGTAATCCCAAACACGCCTTACATAGCCGCCTACATTGTGCTCGAAGACAGGATACGCATC
CTTCGTGTCCTCCATGGCGCTCAAATCTGGCCTGAGGACATTTCTACCGAATAG

Antitoxin


Download         Length: 103 a.a.        Molecular weight: 11249.68 Da        Isoelectric Point: 4.5271

>AT75761 WP_085737313.1 NZ_CP020947:c2258076-2257768 [Rhizobium sp. CIAT894]
MVSNALVQTRIDAAVKDRATAVLENMGLTVSDVVRILLTRTANEGALPLELISNSEAYDVWFRSKVLEALNDTRPDIDDD
EVEASFEKRRATALRKSQVTGS

Download         Length: 309 bp

>AT75761 NZ_CP020947:c2258076-2257768 [Rhizobium sp. CIAT894]
ATGGTATCAAACGCACTTGTCCAAACGCGCATAGATGCGGCGGTCAAGGACCGCGCCACGGCTGTTCTGGAAAATATGGG
GCTGACTGTATCGGACGTCGTGCGCATTCTGCTCACCCGCACCGCCAATGAAGGAGCTCTTCCGCTGGAGCTCATCTCCA
ACAGCGAAGCCTACGATGTATGGTTTCGAAGCAAGGTGCTCGAGGCTCTTAACGATACGCGACCGGATATTGATGATGAC
GAGGTCGAGGCTAGCTTTGAGAAGCGACGGGCAACGGCTCTTCGAAAGAGTCAGGTGACCGGATCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References