Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2080084..2080216 | Replicon | chromosome |
| Accession | NZ_CP020943 | ||
| Organism | Pantoea ananatis strain PNA 97-1R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2080119..2080216 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2080084..2080216 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9Q16_RS09985 | 2075267..2077339 | + | 2073 | WP_014605680.1 | prolyl oligopeptidase family serine peptidase | - |
| B9Q16_RS09990 | 2077323..2077994 | - | 672 | WP_174822874.1 | exodeoxyribonuclease X | - |
| B9Q16_RS09995 | 2077994..2078224 | - | 231 | WP_019105100.1 | DNA polymerase III subunit theta | - |
| B9Q16_RS10000 | 2078375..2078749 | + | 375 | WP_029568849.1 | copper homeostasis periplasmic binding protein CopC | - |
| B9Q16_RS10005 | 2078754..2079629 | + | 876 | WP_104933431.1 | copper homeostasis membrane protein CopD | - |
| B9Q16_RS10010 | 2079657..2080004 | + | 348 | WP_014593872.1 | YebY family protein | - |
| - | 2080084..2080216 | - | 133 | - | - | Antitoxin |
| - | 2080119..2080216 | + | 98 | - | - | Toxin |
| B9Q16_RS10015 | 2080357..2081901 | - | 1545 | WP_104933430.1 | MCP four helix bundle domain-containing protein | - |
| B9Q16_RS10020 | 2082391..2083095 | - | 705 | WP_013026057.1 | GntR family transcriptional regulator | - |
| B9Q16_RS10025 | 2083375..2084997 | + | 1623 | WP_013026056.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T75746 NZ_CP020943:2080119-2080216 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT75746 NZ_CP020943:c2080216-2080084 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
