Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1093674..1093818 | Replicon | chromosome |
| Accession | NZ_CP020901 | ||
| Organism | Klebsiella pneumoniae strain K66-45 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1093710..1093812 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1093674..1093818 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B5G58_RS05165 | 1088804..1090864 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| B5G58_RS05170 | 1090868..1091527 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| B5G58_RS05175 | 1091606..1091836 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B5G58_RS05180 | 1091949..1092323 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| B5G58_RS05185 | 1092327..1093196 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| B5G58_RS05190 | 1093213..1093551 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1093674..1093818 | - | 145 | - | - | Antitoxin |
| - | 1093710..1093812 | + | 103 | - | - | Toxin |
| B5G58_RS05195 | 1093945..1094304 | - | 360 | WP_077253379.1 | tyrosine-type recombinase/integrase | - |
| B5G58_RS31170 | 1094303..1094782 | + | 480 | WP_032419797.1 | lysis protein | - |
| B5G58_RS05210 | 1095571..1097076 | + | 1506 | WP_060544606.1 | hypothetical protein | - |
| B5G58_RS05215 | 1097326..1097754 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| B5G58_RS05220 | 1097764..1098045 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T75651 NZ_CP020901:1093710-1093812 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT75651 NZ_CP020901:c1093818-1093674 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
