75639

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/RHH(antitoxin)
Location 1315005..1315558 Replicon chromosome
Accession NZ_CP020892
Organism Pseudomonas sp. M30-35

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag B9K09_RS06145 Protein ID WP_087515979.1
Coordinates 1315265..1315558 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag B9K09_RS06140 Protein ID WP_087515978.1
Coordinates 1315005..1315277 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B9K09_RS06115 1310153..1312261 + 2109 WP_087515974.1 molybdopterin oxidoreductase family protein -
B9K09_RS06120 1312406..1312732 + 327 WP_087515975.1 Grx4 family monothiol glutaredoxin -
B9K09_RS06125 1312953..1313423 - 471 WP_087515976.1 bacterioferritin -
B9K09_RS06130 1313644..1313862 - 219 WP_087515977.1 bacterioferritin-associated ferredoxin -
B9K09_RS06135 1314148..1314750 + 603 WP_010484487.1 peroxiredoxin C -
B9K09_RS06140 1315005..1315277 + 273 WP_087515978.1 CopG family ribbon-helix-helix protein Antitoxin
B9K09_RS06145 1315265..1315558 + 294 WP_087515979.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
B9K09_RS06150 1315845..1316519 - 675 WP_087515980.1 ribonuclease T -
B9K09_RS06155 1316516..1317562 - 1047 WP_087515981.1 dihydroorotase -
B9K09_RS06160 1317727..1318674 + 948 WP_177408642.1 OmpA family protein -
B9K09_RS06165 1318806..1320023 + 1218 WP_087515982.1 argininosuccinate synthase -
B9K09_RS06170 1320203..1320493 + 291 WP_087515983.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-95)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11025.59 Da        Isoelectric Point: 4.9051

>T75639 WP_087515979.1 NZ_CP020892:1315265-1315558 [Pseudomonas sp. M30-35]
VPRLIITEGAAQGLEHCRQFLIEKGPQVALRAAQAIEQQFARLEEGPEVGRPLPELPELRELIIEFGDSGYVALYRHERV
DDAVYLLAFRHQKEVGY

Download         Length: 294 bp

>T75639 NZ_CP020892:1315265-1315558 [Pseudomonas sp. M30-35]
GTGCCACGATTGATTATCACTGAAGGTGCTGCGCAAGGGTTGGAGCATTGCCGCCAGTTTCTTATCGAGAAAGGCCCGCA
GGTGGCCCTGCGAGCTGCGCAGGCGATTGAGCAACAATTCGCTCGACTGGAAGAAGGCCCGGAAGTAGGCCGCCCACTCC
CAGAGCTGCCGGAGCTGCGTGAGCTGATCATTGAGTTCGGTGATTCGGGTTATGTTGCGCTCTATCGGCATGAGCGTGTG
GATGATGCTGTCTATCTGCTTGCCTTTCGGCATCAGAAAGAAGTAGGTTACTGA

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10336.55 Da        Isoelectric Point: 6.4807

>AT75639 WP_087515978.1 NZ_CP020892:1315005-1315277 [Pseudomonas sp. M30-35]
MATSIKIDDELKSRIQHLAGLRQRSSHWIMREAIAQYVDREEAREGFKQEALASWAAYQETGRHLTGQEARAWLNTWGTE
AEVGLPKCHD

Download         Length: 273 bp

>AT75639 NZ_CP020892:1315005-1315277 [Pseudomonas sp. M30-35]
ATGGCCACTTCTATCAAAATTGATGACGAGCTGAAAAGTCGCATTCAGCACTTGGCTGGTCTGCGTCAACGTTCGTCGCA
TTGGATTATGCGCGAAGCGATAGCGCAGTACGTCGATCGCGAAGAAGCCCGCGAGGGCTTTAAACAGGAAGCCTTGGCGT
CGTGGGCCGCGTATCAGGAAACGGGGCGGCATCTGACCGGCCAAGAGGCTCGGGCCTGGCTCAATACCTGGGGCACCGAG
GCTGAGGTGGGGCTTCCCAAGTGCCACGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References