Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2340480..2340564 Replicon chromosome
Accession NZ_CP020872
Organism Dickeya fangzhongdai strain PA1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2340484..2340564 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2340480..2340564 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B6N31_RS10380 2335563..2336687 - 1125 WP_038918970.1 FIST C-terminal domain-containing protein -
B6N31_RS10385 2336948..2338321 - 1374 WP_162942927.1 pectate lyase -
B6N31_RS10390 2339082..2339816 - 735 WP_121480154.1 hypothetical protein -
- 2340480..2340564 + 85 - - Antitoxin
- 2340484..2340564 - 81 - - Toxin
B6N31_RS10395 2340734..2341072 - 339 WP_121480155.1 YebY family protein -
B6N31_RS10400 2341572..2342015 + 444 WP_100849518.1 hypothetical protein -
B6N31_RS10405 2342358..2342606 + 249 WP_038918974.1 GlsB/YeaQ/YmgE family stress response membrane protein -
B6N31_RS10410 2342721..2344463 - 1743 WP_121480156.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T75605 NZ_CP020872:c2340564-2340484 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 85 bp

>AT75605 NZ_CP020872:2340480-2340564 [Dickeya fangzhongdai]
AGTTAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References