Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 442975..443119 | Replicon | chromosome |
| Accession | NZ_CP020847 | ||
| Organism | Klebsiella variicola strain KPN1481 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 442981..443083 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 442975..443119 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B8O08_RS02175 | 438497..439930 | + | 1434 | WP_086892585.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B8O08_RS02180 | 440046..440285 | + | 240 | WP_002911393.1 | YebV family protein | - |
| B8O08_RS02185 | 440383..440574 | + | 192 | WP_002911395.1 | YebW family protein | - |
| B8O08_RS02190 | 440571..441224 | - | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| B8O08_RS02195 | 441360..442349 | + | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| B8O08_RS31350 | 442453..442596 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 442975..443119 | + | 145 | - | - | Antitoxin |
| - | 442981..443083 | - | 103 | - | - | Toxin |
| B8O08_RS02205 | 443241..443579 | - | 339 | WP_008804271.1 | YebY family protein | - |
| B8O08_RS02210 | 443596..444464 | - | 869 | Protein_431 | copper homeostasis membrane protein CopD | - |
| B8O08_RS02215 | 444468..444842 | - | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| B8O08_RS02220 | 444956..445186 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| B8O08_RS02225 | 445265..445924 | + | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| B8O08_RS02230 | 445928..447988 | - | 2061 | WP_012541258.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T75532 NZ_CP020847:c443083-442981 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT75532 NZ_CP020847:442975-443119 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
