Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1214619..1214764 | Replicon | chromosome |
| Accession | NZ_CP020841 | ||
| Organism | Klebsiella pneumoniae strain KPN1482 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1214626..1214728 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1214619..1214764 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B8O09_RS06250 | 1210152..1211585 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B8O09_RS06255 | 1211701..1211940 | + | 240 | WP_002911393.1 | YebV family protein | - |
| B8O09_RS06260 | 1212038..1212229 | + | 192 | WP_002911395.1 | YebW family protein | - |
| B8O09_RS06265 | 1212226..1212879 | - | 654 | WP_071570906.1 | protein-serine/threonine phosphatase | - |
| B8O09_RS06270 | 1213036..1214004 | + | 969 | WP_168786284.1 | VirK/YbjX family protein | - |
| B8O09_RS30845 | 1214109..1214252 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1214619..1214764 | + | 146 | - | - | Antitoxin |
| - | 1214626..1214728 | - | 103 | - | - | Toxin |
| B8O09_RS06280 | 1214887..1215225 | - | 339 | WP_004189269.1 | YebY family protein | - |
| B8O09_RS06285 | 1215242..1216111 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| B8O09_RS06290 | 1216115..1216489 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| B8O09_RS06295 | 1216602..1216832 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B8O09_RS06300 | 1216911..1217570 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| B8O09_RS06305 | 1217574..1219634 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T75509 NZ_CP020841:c1214728-1214626 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT75509 NZ_CP020841:1214619-1214764 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
