Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3547007..3547152 | Replicon | chromosome |
| Accession | NZ_CP020837 | ||
| Organism | Klebsiella pneumoniae strain BK13043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3547014..3547116 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3547007..3547152 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9G35_RS18035 | 3542539..3543972 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B9G35_RS18040 | 3544088..3544327 | + | 240 | WP_002911393.1 | YebV family protein | - |
| B9G35_RS18045 | 3544425..3544616 | + | 192 | WP_002911395.1 | YebW family protein | - |
| B9G35_RS18050 | 3544613..3545266 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| B9G35_RS18055 | 3545423..3546391 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| B9G35_RS30165 | 3546496..3546639 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3547007..3547152 | + | 146 | - | - | Antitoxin |
| - | 3547014..3547116 | - | 103 | - | - | Toxin |
| B9G35_RS18065 | 3547275..3547613 | - | 339 | WP_002911404.1 | YebY family protein | - |
| B9G35_RS18070 | 3547630..3548499 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| B9G35_RS18075 | 3548503..3548877 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| B9G35_RS18080 | 3548990..3549220 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B9G35_RS18085 | 3549299..3549958 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| B9G35_RS18090 | 3549962..3552022 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T75495 NZ_CP020837:c3547116-3547014 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT75495 NZ_CP020837:3547007-3547152 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
