Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2851348..2851619 | Replicon | chromosome |
| Accession | NZ_CP020835 | ||
| Organism | Escherichia coli strain CFSAN051542 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2851386..2851489 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2851348..2851619 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCD20_RS14845 | 2848505..2849944 | + | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BCD20_RS14850 | 2850062..2850298 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BCD20_RS14855 | 2850403..2850594 | + | 192 | WP_001313035.1 | YebW family protein | - |
| BCD20_RS14860 | 2850595..2851251 | - | 657 | WP_057107450.1 | protein-serine/threonine phosphatase | - |
| - | 2851348..2851619 | + | 272 | - | - | Antitoxin |
| - | 2851386..2851489 | - | 104 | - | - | Toxin |
| BCD20_RS14865 | 2851647..2851988 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BCD20_RS14870 | 2852001..2852873 | - | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| BCD20_RS14875 | 2852877..2853251 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| BCD20_RS14880 | 2853390..2853620 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BCD20_RS14885 | 2853722..2854378 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| BCD20_RS14890 | 2854402..2855064 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T75472 NZ_CP020835:c2851489-2851386 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT75472 NZ_CP020835:2851348-2851619 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
