Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 3082502..3083043 Replicon chromosome
Accession NZ_CP020822
Organism Tenacibaculum maritimum strain TM-KORJJ

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag B9C57_RS13480 Protein ID WP_136438979.1
Coordinates 3082741..3083043 (+) Length 101 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A5S9UJX4
Locus tag B9C57_RS13475 Protein ID WP_024742610.1
Coordinates 3082502..3082744 (+) Length 81 a.a.

Genomic Context

B9C57_RS13450B9C57_RS13455B9C57_RS13460B9C57_RS13465B9C57_RS13475B9C57_RS13480B9C57_RS13485B9C57_RS13490B9C57_RS13445B9C57_RS14770
Location: 3078107..3078718 (612 bp)
Type: Others
Protein ID: WP_136438973.1
Location: 3078724..3079143 (420 bp)
Type: Others
Protein ID: WP_024742587.1
Location: 3079306..3080589 (1284 bp)
Type: Others
Protein ID: WP_136438975.1
Location: 3080750..3081844 (1095 bp)
Type: Others
Protein ID: WP_136438977.1
Location: 3082502..3082744 (243 bp)
Type: Antitoxin
Protein ID: WP_024742610.1
Location: 3082741..3083043 (303 bp)
Type: Toxin
Protein ID: WP_136438979.1
Location: 3083619..3084503 (885 bp)
Type: Others
Protein ID: WP_136438980.1
Location: 3085549..3086733 (1185 bp)
Type: Others
Protein ID: WP_136438982.1
Location: 3077561..3077968 (408 bp)
Type: Others
Protein ID: WP_136439200.1
Location: 3085052..3085198 (147 bp)
Type: Others
Protein ID: WP_159248417.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
B9C57_RS134453077561..3077968-408WP_136439200.1transposase-
B9C57_RS134503078107..3078718+612WP_136438973.1hypothetical protein-
B9C57_RS134553078724..3079143+420WP_024742587.1hypothetical protein-
B9C57_RS134603079306..3080589+1284WP_136438975.1hypothetical protein-
B9C57_RS134653080750..3081844+1095WP_136438977.1reverse transcriptase family protein-
B9C57_RS134753082502..3082744+243WP_024742610.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
B9C57_RS134803082741..3083043+303WP_136438979.1type II toxin-antitoxin system RelE/ParE family toxinToxin
B9C57_RS134853083619..3084503+885WP_136438980.1hypothetical protein-
B9C57_RS147703085052..3085198-147WP_159248417.1hypothetical protein-
B9C57_RS134903085549..3086733+1185WP_136438982.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-94)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 12189.15 Da        Isoelectric Point: 10.2261

>T75461 WP_136438979.1 NZ_CP020822:3082741-3083043 [Tenacibaculum maritimum]
MSKNKYRISQQAIEDLDNIWIYTLNKWSKEQADRYYDLIITEIEFIAGNFMTGKSAEQTRKNYRVTKIKSHLIFYRKMEN
DIVEIVRVLHQRMDVKKRLK

Download         Length: 303 bp

>T75461 NZ_CP020822:3082741-3083043 [Tenacibaculum maritimum]
ATGAGTAAAAACAAATATCGCATAAGTCAACAAGCGATTGAGGATTTAGATAACATTTGGATTTATACACTTAACAAATG
GTCTAAAGAACAAGCTGATAGATATTACGACTTGATAATTACGGAGATTGAATTTATTGCTGGTAACTTTATGACAGGAA
AGTCAGCAGAACAAACTCGAAAGAATTATCGAGTGACTAAGATAAAATCACATCTGATTTTTTATAGAAAAATGGAAAAT
GATATTGTGGAAATTGTTAGAGTTTTACACCAACGAATGGATGTTAAAAAGCGACTGAAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9320.56 Da        Isoelectric Point: 7.4044

>AT75461 WP_024742610.1 NZ_CP020822:3082502-3082744 [Tenacibaculum maritimum]
MGKNTSISLGNHFEDFIREEVKSGRYGSVSEVIRSALRLLEREEKKERELIKALEVGENSGFVENFDPKQHLKELHRKHL

Download         Length: 243 bp

>AT75461 NZ_CP020822:3082502-3082744 [Tenacibaculum maritimum]
ATGGGAAAAAACACATCAATATCACTCGGAAATCATTTTGAGGATTTTATCAGAGAAGAAGTAAAATCTGGAAGATATGG
TTCCGTTAGCGAAGTAATTCGTTCCGCATTACGTTTATTGGAACGAGAAGAAAAAAAAGAAAGAGAACTGATTAAAGCTC
TTGAAGTTGGAGAAAATAGCGGATTTGTTGAAAATTTTGACCCAAAACAACATCTGAAAGAATTACATCGGAAACACTTA
TGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A5S9UJX4

References