Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2795358..2795502 | Replicon | chromosome |
| Accession | NZ_CP020817 | ||
| Organism | Enterobacter sp. Crenshaw | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2795364..2795467 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2795358..2795502 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7P19_RS13610 | 2790516..2791964 | + | 1449 | WP_197736957.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B7P19_RS13615 | 2792071..2792310 | + | 240 | WP_008500472.1 | YebV family protein | - |
| B7P19_RS13620 | 2792345..2792989 | - | 645 | WP_048979907.1 | protein-serine/threonine phosphatase | - |
| B7P19_RS13625 | 2793155..2794096 | + | 942 | WP_048979909.1 | VirK/YbjX family protein | - |
| B7P19_RS13630 | 2794270..2795166 | + | 897 | WP_048979915.1 | benzoate transporter | - |
| - | 2795358..2795502 | + | 145 | - | - | Antitoxin |
| - | 2795364..2795467 | - | 104 | - | - | Toxin |
| B7P19_RS13635 | 2795606..2795944 | - | 339 | WP_033145840.1 | YebY family protein | - |
| B7P19_RS13640 | 2795961..2796830 | - | 870 | WP_048979917.1 | copper homeostasis membrane protein CopD | - |
| B7P19_RS13645 | 2796832..2797203 | - | 372 | WP_048979919.1 | CopC domain-containing protein YobA | - |
| B7P19_RS13650 | 2797340..2797570 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| B7P19_RS13655 | 2797681..2798331 | + | 651 | WP_048979922.1 | carbon-nitrogen hydrolase family protein | - |
| B7P19_RS13660 | 2798356..2799018 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T75428 NZ_CP020817:c2795467-2795364 [Enterobacter sp. Crenshaw]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT75428 NZ_CP020817:2795358-2795502 [Enterobacter sp. Crenshaw]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
