Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3751454..3751622 | Replicon | chromosome |
| Accession | NZ_CP020657 | ||
| Organism | Klebsiella sp. M5al | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3751461..3751564 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3751454..3751622 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI76_RS18030 | 3746728..3747246 | + | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
| BWI76_RS18035 | 3747265..3748029 | + | 765 | WP_004134823.1 | molecular chaperone | - |
| BWI76_RS18040 | 3748032..3750362 | + | 2331 | WP_049089570.1 | fimbrial biogenesis outer membrane usher protein | - |
| BWI76_RS18045 | 3750377..3751336 | + | 960 | WP_004134821.1 | spore coat U domain-containing protein | - |
| - | 3751454..3751622 | + | 169 | - | - | Antitoxin |
| - | 3751461..3751564 | - | 104 | - | - | Toxin |
| BWI76_RS18050 | 3751721..3752059 | - | 339 | WP_004103344.1 | YebY family protein | - |
| BWI76_RS18055 | 3752076..3752945 | - | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| BWI76_RS18060 | 3752950..3753324 | - | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| BWI76_RS18065 | 3753460..3753690 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| BWI76_RS18070 | 3753769..3754428 | + | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| BWI76_RS18075 | 3754435..3756495 | - | 2061 | WP_004134815.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T75263 NZ_CP020657:c3751564-3751461 [Klebsiella sp. M5al]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT75263 NZ_CP020657:3751454-3751622 [Klebsiella sp. M5al]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
