Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1847831..1848099 Replicon chromosome
Accession NZ_CP020545
Organism Escherichia coli strain ZJ3920

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1847869..1847971 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1847831..1848099 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B6V57_RS09720 1844988..1846427 + 1440 WP_001350670.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
B6V57_RS09725 1846545..1846781 + 237 WP_001295499.1 DUF1480 family protein -
B6V57_RS09730 1846886..1847077 + 192 WP_001296140.1 YebW family protein -
B6V57_RS09735 1847078..1847734 - 657 WP_000812741.1 protein-serine/threonine phosphatase -
- 1847831..1848099 + 269 - - Antitoxin
- 1847869..1847971 - 103 - - Toxin
B6V57_RS09740 1848129..1848470 - 342 WP_000984819.1 YebY family protein -
B6V57_RS09745 1848483..1849355 - 873 WP_000879320.1 copper homeostasis membrane protein CopD -
B6V57_RS09750 1849359..1849733 - 375 WP_000168747.1 CopC domain-containing protein YobA -
B6V57_RS09755 1849872..1850102 + 231 WP_000916763.1 DNA polymerase III subunit theta -
B6V57_RS09760 1850204..1850860 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
B6V57_RS09765 1850883..1851545 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T75089 NZ_CP020545:c1847971-1847869 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT75089 NZ_CP020545:1847831-1848099 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References