Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2861387..2861588 | Replicon | chromosome |
| Accession | NZ_CP020528 | ||
| Organism | Enterobacter cloacae strain 174 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2861392..2861495 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2861387..2861588 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXJ76_RS14395 | 2857647..2859095 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AXJ76_RS14400 | 2859202..2859441 | + | 240 | WP_003859885.1 | YebV family protein | - |
| AXJ76_RS14405 | 2859476..2860120 | - | 645 | WP_045337547.1 | protein-serine/threonine phosphatase | - |
| AXJ76_RS14410 | 2860288..2861268 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| AXJ76_RS14415 | 2861314..2861511 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2861387..2861588 | + | 202 | - | - | Antitoxin |
| - | 2861392..2861495 | - | 104 | - | - | Toxin |
| AXJ76_RS14420 | 2861637..2861975 | - | 339 | WP_045350791.1 | YebY family protein | - |
| AXJ76_RS14425 | 2861992..2862861 | - | 870 | WP_045341063.1 | copper homeostasis membrane protein CopD | - |
| AXJ76_RS14430 | 2862863..2863234 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| AXJ76_RS14435 | 2863372..2863602 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AXJ76_RS14440 | 2863714..2864364 | + | 651 | WP_045350792.1 | carbon-nitrogen hydrolase family protein | - |
| AXJ76_RS14445 | 2864389..2865051 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T75034 NZ_CP020528:c2861495-2861392 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT75034 NZ_CP020528:2861387-2861588 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
