Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2652006..2652207 | Replicon | chromosome |
| Accession | NZ_CP020525 | ||
| Organism | Enterobacter cloacae strain 109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2652011..2652114 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2652006..2652207 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AO413_RS12795 | 2648274..2649716 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AO413_RS12800 | 2649821..2650060 | + | 240 | WP_006811010.1 | YebV family protein | - |
| AO413_RS12805 | 2650095..2650739 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| AO413_RS12810 | 2650907..2651887 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| AO413_RS12815 | 2651933..2652130 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2652006..2652207 | + | 202 | - | - | Antitoxin |
| - | 2652011..2652114 | - | 104 | - | - | Toxin |
| AO413_RS12825 | 2652256..2652594 | - | 339 | WP_022648464.1 | YebY family protein | - |
| AO413_RS12830 | 2652611..2653480 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| AO413_RS12835 | 2653482..2653853 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| AO413_RS12840 | 2653991..2654221 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AO413_RS12845 | 2654333..2654971 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| AO413_RS12850 | 2654996..2655658 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T75012 NZ_CP020525:c2652114-2652011 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT75012 NZ_CP020525:2652006-2652207 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
