Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078060..2078331 | Replicon | chromosome |
| Accession | NZ_CP020520 | ||
| Organism | Escherichia coli strain 190 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078190..2078293 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078060..2078331 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9X72_RS10680 | 2074615..2075277 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| A9X72_RS10685 | 2075301..2075957 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| A9X72_RS10690 | 2076059..2076289 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A9X72_RS10695 | 2076428..2076802 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| A9X72_RS10700 | 2076806..2077678 | + | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| A9X72_RS10705 | 2077691..2078032 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2078060..2078331 | - | 272 | - | - | Antitoxin |
| - | 2078190..2078293 | + | 104 | - | - | Toxin |
| A9X72_RS10710 | 2078428..2079084 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| A9X72_RS10715 | 2079085..2079276 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A9X72_RS10720 | 2079381..2079617 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A9X72_RS10725 | 2079735..2081174 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74994 NZ_CP020520:2078190-2078293 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGGCCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGGCCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT74994 NZ_CP020520:c2078331-2078060 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGCCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGCCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
