Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2181919..2182190 | Replicon | chromosome |
| Accession | NZ_CP020514 | ||
| Organism | Escherichia coli strain 219 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2182049..2182152 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2181919..2182190 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9P12_RS11175 | 2178474..2179136 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| A9P12_RS11180 | 2179160..2179816 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| A9P12_RS11185 | 2179918..2180148 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A9P12_RS11190 | 2180287..2180661 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| A9P12_RS11195 | 2180665..2181537 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| A9P12_RS11200 | 2181550..2181891 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2181919..2182190 | - | 272 | - | - | Antitoxin |
| - | 2182049..2182152 | + | 104 | - | - | Toxin |
| A9P12_RS11205 | 2182287..2182943 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| A9P12_RS11210 | 2182944..2183135 | - | 192 | WP_000457842.1 | YebW family protein | - |
| A9P12_RS11215 | 2183240..2183476 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A9P12_RS11220 | 2183594..2185033 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74908 NZ_CP020514:2182049-2182152 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT74908 NZ_CP020514:c2182190-2181919 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
