Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2177612..2177883 | Replicon | chromosome |
| Accession | NZ_CP020509 | ||
| Organism | Escherichia coli strain 165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2177742..2177845 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2177612..2177883 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWB10_RS11215 | 2174167..2174829 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AWB10_RS11220 | 2174853..2175509 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| AWB10_RS11225 | 2175611..2175841 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AWB10_RS11230 | 2175980..2176354 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AWB10_RS11235 | 2176358..2177230 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| AWB10_RS11240 | 2177243..2177584 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2177612..2177883 | - | 272 | - | - | Antitoxin |
| - | 2177742..2177845 | + | 104 | - | - | Toxin |
| AWB10_RS11245 | 2177980..2178636 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| AWB10_RS11250 | 2178637..2178828 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AWB10_RS11255 | 2178933..2179169 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AWB10_RS11260 | 2179287..2180726 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74873 NZ_CP020509:2177742-2177845 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT74873 NZ_CP020509:c2177883-2177612 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
