Detailed information of TA system TA074870

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 1409941..1410566
• Replicon: chromosome
• Accession: NZ_CP020509
• Organism: Escherichia coli strain 165

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: AWB10_RS07305
• Protein ID: WP_000911330.1
• Coordinates: 1410168..1410566 (+)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: U9XQV3
• Locus tag: AWB10_RS07300
• Protein ID: WP_000450524.1
• Coordinates: 1409941..1410168 (+)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AWB10_RS07275	1405745..1406215	-	471	WP_001068682.1	thioredoxin-dependent thiol peroxidase	-
AWB10_RS07280	1406215..1406787	-	573	WP_000176187.1	glycine cleavage system transcriptional repressor	-
AWB10_RS07285	1406933..1407811	+	879	WP_001295469.1	4-hydroxy-tetrahydrodipicolinate synthase	-
AWB10_RS07290	1407828..1408862	+	1035	WP_001330579.1	outer membrane protein assembly factor BamC	-
AWB10_RS07295	1409075..1409788	+	714	WP_001347624.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
AWB10_RS07300	1409941..1410168	+	228	WP_000450524.1	toxin-antitoxin system antitoxin VapB	Antitoxin
AWB10_RS07305	1410168..1410566	+	399	WP_000911330.1	tRNA(fMet)-specific endonuclease VapC	Toxin
AWB10_RS07310	1410713..1411576	+	864	WP_001267498.1	neutral zinc metallopeptidase	-
AWB10_RS07315	1411591..1413606	+	2016	WP_000829292.1	tRNA cytosine(34) acetyltransferase TmcA	-
AWB10_RS07320	1413680..1414378	+	699	WP_000679812.1	esterase	-
AWB10_RS07325	1414459..1414659	-	201	WP_000383836.1	YpfN family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-125)

Antitoxin

• SpoVT-AbrB domain (7-52)

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 14894.25 Da
• Isoelectric Point: 9.2216

>T74870 WP_000911330.1 NZ_CP020509:1410168-1410566 [Escherichia coli]
MLKFMLDTNICIFTIKNKPVHVRERFNLNSGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRLVVLDYDSAAATHT
GQIRAELARQGRPVGPFDQMIAGHARSRGLIVVTNNTREFERVAGIRLEDWS

Nucleotide

• Length: 399 bp

>T74870 NZ_CP020509:1410168-1410566 [Escherichia coli]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8498.61 Da
• Isoelectric Point: 4.3867

>AT74870 WP_000450524.1 NZ_CP020509:1409941-1410168 [Escherichia coli]
METTVFLSNRSQAVRLPKAVALPEDVKKVEIIAIGRTRIITPAGESWDSWFDGENVSADFMDIRDQPAMQERESF

Nucleotide

• Length: 228 bp

>AT74870 NZ_CP020509:1409941-1410168 [Escherichia coli]
ATGGAAACTACTGTATTTTTAAGTAATCGCAGTCAGGCCGTCAGATTACCGAAAGCGGTCGCTCTGCCAGAAGACGTTAA
GAAAGTAGAAATTATTGCGATTGGTCGTACAAGAATCATCACTCCCGCCGGTGAGTCCTGGGACAGTTGGTTTGATGGCG
AAAATGTGAGTGCGGATTTTATGGATATCCGTGATCAACCCGCAATGCAGGAAAGGGAATCATTTTGA

Structures

Antitoxin

• AlphaFold DB: A0A829CM33