Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2116716..2116856 | Replicon | chromosome |
| Accession | NZ_CP020503 | ||
| Organism | Serratia marcescens strain 95 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2116760..2116856 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2116716..2116856 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM681_RS10320 | 2111917..2112342 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| AM681_RS10325 | 2112537..2113490 | + | 954 | WP_038875880.1 | prolyl aminopeptidase | - |
| AM681_RS10330 | 2113524..2113754 | - | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| AM681_RS10335 | 2114095..2114613 | + | 519 | WP_038875847.1 | non-heme ferritin | - |
| AM681_RS10340 | 2114907..2115323 | + | 417 | WP_048233438.1 | CopC domain-containing protein YobA | - |
| AM681_RS10345 | 2115326..2116207 | + | 882 | WP_048233440.1 | copper homeostasis membrane protein CopD | - |
| AM681_RS10350 | 2116277..2116618 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2116716..2116856 | - | 141 | - | - | Antitoxin |
| - | 2116760..2116856 | + | 97 | - | - | Toxin |
| AM681_RS10355 | 2117277..2117606 | - | 330 | WP_038875697.1 | DUF1493 family protein | - |
| AM681_RS10360 | 2117600..2118058 | - | 459 | WP_048233442.1 | hypothetical protein | - |
| AM681_RS10365 | 2118462..2118776 | - | 315 | WP_181421323.1 | hypothetical protein | - |
| AM681_RS10375 | 2119431..2119781 | + | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| AM681_RS10380 | 2119832..2120134 | - | 303 | WP_038875692.1 | hypothetical protein | - |
| AM681_RS10385 | 2120421..2121620 | + | 1200 | WP_047727768.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T74824 NZ_CP020503:2116760-2116856 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT74824 NZ_CP020503:c2116856-2116716 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
