Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1911647..1911792 | Replicon | chromosome |
| Accession | NZ_CP020498 | ||
| Organism | Klebsiella pneumoniae strain BWHC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1911683..1911785 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1911647..1911792 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA595_RS09615 | 1906777..1908837 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| AA595_RS09620 | 1908841..1909500 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AA595_RS09625 | 1909579..1909809 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AA595_RS09630 | 1909922..1910296 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AA595_RS09635 | 1910300..1911169 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AA595_RS09640 | 1911186..1911524 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1911647..1911792 | - | 146 | - | - | Antitoxin |
| - | 1911683..1911785 | + | 103 | - | - | Toxin |
| AA595_RS28235 | 1912160..1912303 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AA595_RS09650 | 1912408..1913376 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AA595_RS09655 | 1913533..1914186 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| AA595_RS09660 | 1914183..1914374 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AA595_RS09665 | 1914472..1914711 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AA595_RS09670 | 1914827..1916260 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T74802 NZ_CP020498:1911683-1911785 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT74802 NZ_CP020498:c1911792-1911647 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
