Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2965195..2965466 | Replicon | chromosome |
| Accession | NZ_CP020495 | ||
| Organism | Escherichia coli strain 103 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2965233..2965336 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2965195..2965466 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPA47_RS14775 | 2962352..2963791 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CPA47_RS14780 | 2963909..2964145 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CPA47_RS14785 | 2964250..2964441 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CPA47_RS14790 | 2964442..2965098 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 2965195..2965466 | + | 272 | - | - | Antitoxin |
| - | 2965233..2965336 | - | 104 | - | - | Toxin |
| CPA47_RS14795 | 2965494..2965835 | - | 342 | WP_001520705.1 | YebY family protein | - |
| CPA47_RS14800 | 2965848..2966720 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| CPA47_RS14805 | 2966724..2967098 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| CPA47_RS14810 | 2967237..2967467 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CPA47_RS14815 | 2967569..2968225 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| CPA47_RS14820 | 2968249..2968911 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74766 NZ_CP020495:c2965336-2965233 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT74766 NZ_CP020495:2965195-2965466 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
